Gene annotation
Transcriptome id Sobic.005G187500.1
Synonym Sb05g024510, GIF3
Functional annotation GRF-interacting factor 2, putative, expressed
UniProt C5Y6E8
Pfam PF05030
Panther DB PTHR23107 PTHR23107:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00850 : GRF1-interacting factor 3
RAP-DB (Rice) LOC_Os11g40100.3 : GRF-interacting factor 2, putative, expressed
MaizeGDB (Corn) Zm00025a029348
Brachypodium KQJ87823
Barley -
Wheat TraesCS4A02G151200 , TraesCS4A02G151200 , TraesCS4B02G158300
Populus -


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cDNA sequences
Sobic.005G187500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
3 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
4 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
5 Sobic.006G120800 transglutaminase, putative, expressed -
6 Sobic.006G183000 RING zinc finger protein, putative, expressed -
7 Sobic.003G307900 BSD domain containing protein, expressed -
8 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
9 Sobic.001G199300 GIL1, putative, expressed -
10 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
11 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
12 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
13 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
14 Sobic.001G080000 expressed protein -
15 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
16 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
17 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
18 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
19 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
20 Sobic.008G111700 expressed protein -


Gene co-expression network
sample Sobic005G187500 Sobic005G187500 Sobic001G038100 Sobic001G038100 Sobic005G187500--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic005G187500--Sobic002G204000 Sobic003G405700 Sobic003G405700 Sobic005G187500--Sobic003G405700 Sobic001G507400 Sobic001G507400 Sobic005G187500--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic005G187500--Sobic006G120800 Sobic006G183000 Sobic006G183000 Sobic005G187500--Sobic006G183000 Sobic003G307900 Sobic003G307900 Sobic005G187500--Sobic003G307900 Sobic002G359900 Sobic002G359900 Sobic005G187500--Sobic002G359900 Sobic001G199300 Sobic001G199300 Sobic005G187500--Sobic001G199300 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic007G117100 Sobic007G117100 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic002G204000--Sobic001G038100 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic002G204000--Sobic001G507400 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic001G507400--Sobic001G038100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic001G507400--Sobic003G420700 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic003G083900 Sobic003G083900 Sobic003G307900--Sobic003G083900 Sobic008G125000 Sobic008G125000 Sobic003G307900--Sobic008G125000 Sobic004G133700 Sobic004G133700 Sobic003G307900--Sobic004G133700 Sobic001G370300 Sobic001G370300 Sobic003G307900--Sobic001G370300 Sobic006G087100 Sobic006G087100 Sobic003G307900--Sobic006G087100 Sobic004G057800 Sobic004G057800 Sobic003G307900--Sobic004G057800 Sobic001G285300 Sobic001G285300 Sobic003G307900--Sobic001G285300 Sobic003G307900--Sobic005G187500 Sobic007G010900 Sobic007G010900 Sobic003G307900--Sobic007G010900 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic001G458200 Sobic001G458200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic002G359900--Sobic001G038100 Sobic002G359900--Sobic002G204000 Sobic010G088300 Sobic010G088300 Sobic001G199300--Sobic010G088300 Sobic003G043400 Sobic003G043400 Sobic001G199300--Sobic003G043400 Sobic001G199300--Sobic005G187500 Sobic001G199300--Sobic003G031200 Sobic001G544100 Sobic001G544100 Sobic001G199300--Sobic001G544100 Sobic001G199300--Sobic003G307900 Sobic003G190800 Sobic003G190800 Sobic001G199300--Sobic003G190800 Sobic001G434400 Sobic001G434400 Sobic001G199300--Sobic001G434400 Sobic004G242100 Sobic004G242100 Sobic001G199300--Sobic004G242100
Octagon: transcription factors


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