Gene annotation
Transcriptome id Sobic.002G359900.2,Sobic.002G359900.1
Synonym Sb02g038050
Functional annotation nuclear transport factor 2, putative, expressed
UniProt A0A1B6QFA5 , A0A1B6QFA6
Pfam PF00076 PF02136
Panther DB PTHR10693
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0006810transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G43960 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os02g03890.1 : nuclear transport factor 2, putative, expressed
MaizeGDB (Corn) Zm00025a048600
Brachypodium -
Barley HORVU7Hr1G061850.3 , HORVU7Hr1G061850.2 , HORVU7Hr1G061850.1
Wheat TraesCS7D02G280400 , TraesCS7D02G280400 , TraesCS7A02G281900 , TraesCS7B02G179500 , TraesCS7B02G179500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
2 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
3 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
4 Sobic.006G120800 transglutaminase, putative, expressed -
5 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
6 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
7 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
8 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
10 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
11 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
12 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
13 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
14 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
15 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
16 Sobic.004G345100 expressed protein -
17 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
18 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
19 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
20 Sobic.008G111700 expressed protein -


Gene co-expression network
sample Sobic002G359900 Sobic002G359900 Sobic010G253100 Sobic010G253100 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic006G261100 Sobic006G261100 Sobic002G359900--Sobic006G261100 Sobic006G120800 Sobic006G120800 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic001G458200 Sobic001G458200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic001G038100 Sobic001G038100 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic010G253100--Sobic002G359900 Sobic010G253100--Sobic001G038100 Sobic010G253100--Sobic006G120800 Sobic010G253100--Sobic006G261100 Sobic010G253100--Sobic001G458200 Sobic010G253100--Sobic002G204000 Sobic002G276900 Sobic002G276900 Sobic010G253100--Sobic002G276900 Sobic010G253100--Sobic002G403200 Sobic003G192000 Sobic003G192000 Sobic010G253100--Sobic003G192000 Sobic003G436500--Sobic002G359900 Sobic003G436500--Sobic003G031200 Sobic002G400400 Sobic002G400400 Sobic003G436500--Sobic002G400400 Sobic001G147100 Sobic001G147100 Sobic003G436500--Sobic001G147100 Sobic005G187500 Sobic005G187500 Sobic003G436500--Sobic005G187500 Sobic003G436500--Sobic010G253100 Sobic004G028800 Sobic004G028800 Sobic003G436500--Sobic004G028800 Sobic008G160500 Sobic008G160500 Sobic003G436500--Sobic008G160500 Sobic002G129200 Sobic002G129200 Sobic003G436500--Sobic002G129200 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic001G285300 Sobic001G285300 Sobic003G031200--Sobic001G285300 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic001G458200--Sobic002G044000 Sobic002G403200--Sobic003G192000 Sobic010G207400 Sobic010G207400 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic009G030400 Sobic009G030400 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic002G204000--Sobic001G038100 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic002G204000--Sobic001G507400
Octagon: transcription factors


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