Gene annotation
Transcriptome id Sobic.010G253100.1
Synonym ATRBL14, Sb10g029120, RBL14
Functional annotation OsRhmbd3 - Putative Rhomboid homologue, expressed
UniProt C5Z979
Pfam PF00641 PF01694
Panther DB PTHR12917 PTHR12917:SF18
NCBI CDD KOG2632; Rhomboid family proteins
KEGG Orthology K09651; rhomboid domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0016021integral component of membrane GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G17611 : RHOMBOID-like protein 14
RAP-DB (Rice) LOC_Os01g18100.1 : OsRhmbd3 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a035179 , Zm00025a018379
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
2 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
3 Sobic.006G120800 transglutaminase, putative, expressed -
4 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
5 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
6 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
7 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
8 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
10 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
11 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
12 Sobic.007G038800 expressed protein -
13 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
14 Sobic.009G100300 expressed protein -
15 Sobic.004G186000 salt tolerant protein, putative, expressed -
16 Sobic.005G072400 expressed protein -
17 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
18 Sobic.001G079100 upstream activation factor subunit spp27, putative, expressed K15223: UAF30, upstream activation factor subunit UAF30
19 Sobic.003G189900 expressed protein -
20 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4


Gene co-expression network
sample Sobic010G253100 Sobic010G253100 Sobic002G359900 Sobic002G359900 Sobic010G253100--Sobic002G359900 Sobic001G038100 Sobic001G038100 Sobic010G253100--Sobic001G038100 Sobic006G120800 Sobic006G120800 Sobic010G253100--Sobic006G120800 Sobic006G261100 Sobic006G261100 Sobic010G253100--Sobic006G261100 Sobic001G458200 Sobic001G458200 Sobic010G253100--Sobic001G458200 Sobic002G204000 Sobic002G204000 Sobic010G253100--Sobic002G204000 Sobic002G276900 Sobic002G276900 Sobic010G253100--Sobic002G276900 Sobic002G403200 Sobic002G403200 Sobic010G253100--Sobic002G403200 Sobic003G192000 Sobic003G192000 Sobic010G253100--Sobic003G192000 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic002G359900--Sobic001G458200 Sobic002G359900--Sobic002G403200 Sobic002G359900--Sobic001G038100 Sobic002G359900--Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic007G117100 Sobic007G117100 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic002G204000--Sobic001G038100 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic002G204000--Sobic001G507400 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic002G403200--Sobic003G192000 Sobic010G207400 Sobic010G207400 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic008G160500 Sobic008G160500 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic009G030400 Sobic009G030400 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic003G192000--Sobic001G458200 Sobic003G407900 Sobic003G407900 Sobic003G192000--Sobic003G407900 Sobic003G192000--Sobic002G403200 Sobic003G192000--Sobic006G261100 Sobic003G192000--Sobic010G253100 Sobic003G192000--Sobic002G359900 Sobic003G192000--Sobic009G030400 Sobic003G192000--Sobic002G276900 Sobic003G192000--Sobic010G095700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.