Gene annotation
Transcriptome id Sobic.001G079100.1
Synonym Sb01g007140
Functional annotation upstream activation factor subunit spp27, putative, expressed
UniProt C5WZA9
Pfam PF08766 PF02201
Panther DB PTHR13844 PTHR13844:SF4
NCBI CDD KOG1946; RNA polymerase I transcription factor UAF
KEGG Orthology K15223; UAF30, upstream activation factor subunit UAF30
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G19080 : SWIB complex BAF60b domain-containing protein
RAP-DB (Rice) LOC_Os03g55570.1 : upstream activation factor subunit spp27, putative, expressed
MaizeGDB (Corn) Zm00025a016731 , Zm00025a008284
Brachypodium KQK13042
Barley HORVU5Hr1G097590.1 , HORVU5Hr1G097590.3 , HORVU5Hr1G097590.5 , HORVU5Hr1G097590.4 , HORVU5Hr1G097590.7 , HORVU5Hr1G097590.6
Wheat TraesCS5A02G401500 , TraesCS5A02G401500 , TraesCS5D02G411700 , TraesCS5B02G406200 , TraesCS5B02G406200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
2 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
3 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
4 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
6 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
7 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
8 Sobic.006G120800 transglutaminase, putative, expressed -
9 Sobic.006G051900 expressed protein -
10 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
11 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
13 Sobic.002G341100 bromodomain domain containing protein, expressed -
14 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
15 Sobic.005G072400 expressed protein -
16 Sobic.004G272900 expressed protein -
17 Sobic.004G186000 salt tolerant protein, putative, expressed -
18 Sobic.010G257400 expressed protein -
19 Sobic.009G100300 expressed protein -
20 Sobic.001G033400 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G079100 Sobic001G079100 Sobic006G261100 Sobic006G261100 Sobic001G079100--Sobic006G261100 Sobic002G276900 Sobic002G276900 Sobic001G079100--Sobic002G276900 Sobic002G359900 Sobic002G359900 Sobic001G079100--Sobic002G359900 Sobic001G038100 Sobic001G038100 Sobic001G079100--Sobic001G038100 Sobic001G230500 Sobic001G230500 Sobic001G079100--Sobic001G230500 Sobic002G403200 Sobic002G403200 Sobic001G079100--Sobic002G403200 Sobic010G253100 Sobic010G253100 Sobic001G079100--Sobic010G253100 Sobic006G120800 Sobic006G120800 Sobic001G079100--Sobic006G120800 Sobic006G051900 Sobic006G051900 Sobic001G079100--Sobic006G051900 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic001G458200 Sobic001G458200 Sobic002G359900--Sobic001G458200 Sobic002G359900--Sobic002G403200 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic003G433500 Sobic003G433500 Sobic001G230500--Sobic003G433500 Sobic001G168900 Sobic001G168900 Sobic001G230500--Sobic001G168900 Sobic005G046900 Sobic005G046900 Sobic001G230500--Sobic005G046900 Sobic009G195200 Sobic009G195200 Sobic001G230500--Sobic009G195200 Sobic001G230500--Sobic006G120800 Sobic005G072400 Sobic005G072400 Sobic001G230500--Sobic005G072400 Sobic003G427100 Sobic003G427100 Sobic001G230500--Sobic003G427100 Sobic007G187600 Sobic007G187600 Sobic001G230500--Sobic007G187600 Sobic001G230500--Sobic001G038100 Sobic003G192000 Sobic003G192000 Sobic002G403200--Sobic003G192000 Sobic010G207400 Sobic010G207400 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic008G160500 Sobic008G160500 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic009G030400 Sobic009G030400 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic010G253100--Sobic002G359900 Sobic010G253100--Sobic001G038100 Sobic010G253100--Sobic006G120800 Sobic010G253100--Sobic006G261100 Sobic010G253100--Sobic001G458200 Sobic010G253100--Sobic002G204000 Sobic010G253100--Sobic002G276900 Sobic010G253100--Sobic002G403200 Sobic010G253100--Sobic003G192000 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic006G051900--Sobic007G050300 Sobic006G278200 Sobic006G278200 Sobic006G051900--Sobic006G278200 Sobic006G051900--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic006G051900--Sobic010G197800 Sobic001G472100 Sobic001G472100 Sobic006G051900--Sobic001G472100 Sobic009G137900 Sobic009G137900 Sobic006G051900--Sobic009G137900 Sobic002G095700 Sobic002G095700 Sobic006G051900--Sobic002G095700 Sobic006G049100 Sobic006G049100 Sobic006G051900--Sobic006G049100 Sobic006G051900--Sobic005G046900
Octagon: transcription factors


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