Gene annotation
Transcriptome id Sobic.007G050300.1,Sobic.007G050300.2
Synonym
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1Z5R864 , A0A1B6PFN8
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32360 : Zinc finger (CCCH-type) family protein
RAP-DB (Rice) LOC_Os08g06330.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a055115
Brachypodium KQJ95303 , KQJ95302
Barley HORVU7Hr1G070450.1 , HORVU7Hr1G070450.2
Wheat TraesCS7D02G294600 , TraesCS7B02G187100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G050300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G051900 expressed protein -
2 Sobic.006G120800 transglutaminase, putative, expressed -
3 Sobic.010G197800 expressed protein -
4 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
5 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
6 Sobic.010G079800 expressed protein -
7 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
8 Sobic.003G253400 expressed protein -
9 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
11 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
12 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
13 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
14 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
15 Sobic.001G239100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
17 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
18 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
19 Sobic.005G065100 OsFBX234 - F-box domain containing protein, expressed -
20 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -


Gene co-expression network
sample Sobic007G050300 Sobic007G050300 Sobic006G051900 Sobic006G051900 Sobic007G050300--Sobic006G051900 Sobic006G120800 Sobic006G120800 Sobic007G050300--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic007G050300--Sobic010G197800 Sobic002G095700 Sobic002G095700 Sobic007G050300--Sobic002G095700 Sobic009G192500 Sobic009G192500 Sobic007G050300--Sobic009G192500 Sobic010G079800 Sobic010G079800 Sobic007G050300--Sobic010G079800 Sobic001G038100 Sobic001G038100 Sobic007G050300--Sobic001G038100 Sobic003G253400 Sobic003G253400 Sobic007G050300--Sobic003G253400 Sobic007G117100 Sobic007G117100 Sobic007G050300--Sobic007G117100 Sobic006G051900--Sobic007G050300 Sobic006G278200 Sobic006G278200 Sobic006G051900--Sobic006G278200 Sobic006G051900--Sobic006G120800 Sobic006G051900--Sobic010G197800 Sobic001G472100 Sobic001G472100 Sobic006G051900--Sobic001G472100 Sobic009G137900 Sobic009G137900 Sobic006G051900--Sobic009G137900 Sobic006G051900--Sobic002G095700 Sobic006G049100 Sobic006G049100 Sobic006G051900--Sobic006G049100 Sobic005G046900 Sobic005G046900 Sobic006G051900--Sobic005G046900 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic010G197800--Sobic007G050300 Sobic010G197800--Sobic006G051900 Sobic010G197800--Sobic001G335500 Sobic007G210300 Sobic007G210300 Sobic010G197800--Sobic007G210300 Sobic010G197800--Sobic003G253400 Sobic002G224700 Sobic002G224700 Sobic010G197800--Sobic002G224700 Sobic006G276000 Sobic006G276000 Sobic010G197800--Sobic006G276000 Sobic005G032400 Sobic005G032400 Sobic010G197800--Sobic005G032400 Sobic010G197800--Sobic006G120800 Sobic002G095700--Sobic006G278200 Sobic008G073000 Sobic008G073000 Sobic002G095700--Sobic008G073000 Sobic005G030300 Sobic005G030300 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic002G095700--Sobic002G067800 Sobic003G433500 Sobic003G433500 Sobic002G095700--Sobic003G433500 Sobic002G089900 Sobic002G089900 Sobic002G095700--Sobic002G089900 Sobic009G022100 Sobic009G022100 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100 Sobic003G132700 Sobic003G132700 Sobic009G192500--Sobic003G132700 Sobic009G192500--Sobic007G117100 Sobic002G430900 Sobic002G430900 Sobic009G192500--Sobic002G430900 Sobic009G192500--Sobic009G022100 Sobic007G125700 Sobic007G125700 Sobic009G192500--Sobic007G125700 Sobic009G192500--Sobic002G095700 Sobic009G192500--Sobic003G253400 Sobic002G223300 Sobic002G223300 Sobic009G192500--Sobic002G223300 Sobic004G229100 Sobic004G229100 Sobic009G192500--Sobic004G229100 Sobic001G239100 Sobic001G239100 Sobic010G079800--Sobic001G239100 Sobic010G079800--Sobic007G050300 Sobic001G136500 Sobic001G136500 Sobic010G079800--Sobic001G136500 Sobic004G146200 Sobic004G146200 Sobic010G079800--Sobic004G146200 Sobic007G153700 Sobic007G153700 Sobic010G079800--Sobic007G153700 Sobic007G031100 Sobic007G031100 Sobic010G079800--Sobic007G031100 Sobic001G478700 Sobic001G478700 Sobic010G079800--Sobic001G478700 Sobic004G206300 Sobic004G206300 Sobic010G079800--Sobic004G206300 Sobic001G188700 Sobic001G188700 Sobic010G079800--Sobic001G188700 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic010G279900 Sobic010G279900 Sobic003G253400--Sobic010G279900 Sobic003G062400 Sobic003G062400 Sobic003G253400--Sobic003G062400 Sobic001G395100 Sobic001G395100 Sobic003G253400--Sobic001G395100 Sobic005G040900 Sobic005G040900 Sobic003G253400--Sobic005G040900 Sobic005G025800 Sobic005G025800 Sobic003G253400--Sobic005G025800 Sobic003G253400--Sobic009G192500 Sobic004G347100 Sobic004G347100 Sobic003G253400--Sobic004G347100 Sobic007G183300 Sobic007G183300 Sobic003G253400--Sobic007G183300 Sobic008G058800 Sobic008G058800 Sobic003G253400--Sobic008G058800 Sobic007G117100--Sobic001G038100 Sobic007G117100--Sobic003G433500 Sobic007G117100--Sobic003G132700 Sobic007G117100--Sobic006G120800 Sobic007G117100--Sobic001G507400 Sobic007G117100--Sobic001G309100 Sobic003G354100 Sobic003G354100 Sobic007G117100--Sobic003G354100 Sobic002G014700 Sobic002G014700 Sobic007G117100--Sobic002G014700 Sobic007G117100--Sobic002G089900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.