Gene annotation
Transcriptome id Sobic.001G239100.1
Synonym Sb01g021160, ASK2, SKP1B
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt C5X0J3
Pfam PF01466
Panther DB PTHR11165 PTHR11165:SF67
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G20140 : SKP1-like 4
RAP-DB (Rice) LOC_Os10g30200.1 : SKP1-like protein 1B, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G153700 transcription regulator, putative, expressed -
2 Sobic.010G079800 expressed protein -
3 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
4 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
6 Sobic.009G232500 expressed protein -
7 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
8 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
10 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
11 Sobic.009G060400 proline-rich family protein, putative, expressed -
12 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
13 Sobic.004G207000 fasciated ear2, putative, expressed -
14 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
15 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
16 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
17 Sobic.004G146200 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K16904: dCTP diphosphatase
18 Sobic.010G256200 expressed protein -
19 Sobic.007G036750 - -
20 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A


Gene co-expression network
sample Sobic001G239100 Sobic001G239100 Sobic007G153700 Sobic007G153700 Sobic001G239100--Sobic007G153700 Sobic010G079800 Sobic010G079800 Sobic001G239100--Sobic010G079800 Sobic002G196500 Sobic002G196500 Sobic001G239100--Sobic002G196500 Sobic007G050300 Sobic007G050300 Sobic001G239100--Sobic007G050300 Sobic002G302600 Sobic002G302600 Sobic001G239100--Sobic002G302600 Sobic009G232500 Sobic009G232500 Sobic001G239100--Sobic009G232500 Sobic002G374200 Sobic002G374200 Sobic001G239100--Sobic002G374200 Sobic001G157600 Sobic001G157600 Sobic001G239100--Sobic001G157600 Sobic001G440900 Sobic001G440900 Sobic001G239100--Sobic001G440900 Sobic007G153700--Sobic001G239100 Sobic001G468000 Sobic001G468000 Sobic007G153700--Sobic001G468000 Sobic009G006900 Sobic009G006900 Sobic007G153700--Sobic009G006900 Sobic007G153700--Sobic001G440900 Sobic003G274400 Sobic003G274400 Sobic007G153700--Sobic003G274400 Sobic010G237800 Sobic010G237800 Sobic007G153700--Sobic010G237800 Sobic004G129600 Sobic004G129600 Sobic007G153700--Sobic004G129600 Sobic007G153700--Sobic002G374200 Sobic007G153700--Sobic002G196500 Sobic010G079800--Sobic001G239100 Sobic010G079800--Sobic007G050300 Sobic001G136500 Sobic001G136500 Sobic010G079800--Sobic001G136500 Sobic004G146200 Sobic004G146200 Sobic010G079800--Sobic004G146200 Sobic010G079800--Sobic007G153700 Sobic007G031100 Sobic007G031100 Sobic010G079800--Sobic007G031100 Sobic001G478700 Sobic001G478700 Sobic010G079800--Sobic001G478700 Sobic004G206300 Sobic004G206300 Sobic010G079800--Sobic004G206300 Sobic001G188700 Sobic001G188700 Sobic010G079800--Sobic001G188700 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic006G272800 Sobic006G272800 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic001G171100 Sobic001G171100 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic006G051900 Sobic006G051900 Sobic007G050300--Sobic006G051900 Sobic006G120800 Sobic006G120800 Sobic007G050300--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic007G050300--Sobic010G197800 Sobic002G095700 Sobic002G095700 Sobic007G050300--Sobic002G095700 Sobic009G192500 Sobic009G192500 Sobic007G050300--Sobic009G192500 Sobic007G050300--Sobic010G079800 Sobic001G038100 Sobic001G038100 Sobic007G050300--Sobic001G038100 Sobic003G253400 Sobic003G253400 Sobic007G050300--Sobic003G253400 Sobic007G117100 Sobic007G117100 Sobic007G050300--Sobic007G117100 Sobic001G540700 Sobic001G540700 Sobic002G302600--Sobic001G540700 Sobic004G207000 Sobic004G207000 Sobic002G302600--Sobic004G207000 Sobic002G302600--Sobic006G272800 Sobic002G302600--Sobic001G468000 Sobic002G284100 Sobic002G284100 Sobic002G302600--Sobic002G284100 Sobic006G126600 Sobic006G126600 Sobic002G302600--Sobic006G126600 Sobic002G302600--Sobic009G006900 Sobic009G031500 Sobic009G031500 Sobic002G302600--Sobic009G031500 Sobic007G197100 Sobic007G197100 Sobic002G302600--Sobic007G197100 Sobic003G410200 Sobic003G410200 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic009G232500--Sobic001G478700 Sobic007G010200 Sobic007G010200 Sobic009G232500--Sobic007G010200 Sobic009G232500--Sobic001G239100 Sobic009G232500--Sobic007G031100 Sobic010G212700 Sobic010G212700 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic002G374200--Sobic009G232500 Sobic002G374200--Sobic003G410200 Sobic002G374200--Sobic002G196500 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G440900--Sobic001G107300 Sobic002G289800 Sobic002G289800 Sobic001G440900--Sobic002G289800 Sobic001G440900--Sobic007G153700
Octagon: transcription factors


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