Gene annotation
Transcriptome id Sobic.001G107300.4,Sobic.001G107300.2,Sobic.001G107300.3,Sobic.001G107300.5
Synonym Sb01g009580
Functional annotation WD repeat-containing protein 5, putative, expressed
UniProt C5WM28
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF461
NCBI CDD KOG0295; WD40 repeat-containing protein KOG0271Notchless-like WD40 repeat-containing protein
KEGG Orthology K14963; WDR5, SWD3, COMPASS component SWD3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G49660 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g51550.2,LOC_Os03g51550.1 : WD repeat-containing protein 5, putative, expressed
MaizeGDB (Corn) Zm00025a007960
Brachypodium KQK13448 , PNT74211 , KQK13447
Barley HORVU4Hr1G009500.1
Wheat TraesCS4D02G056800 , TraesCS4A02G258000 , TraesCS4B02G056500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
2 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
3 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
4 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
5 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
6 Sobic.003G109200 expressed protein -
7 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.001G162800 expressed protein -
9 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
10 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
11 Sobic.009G232500 expressed protein -
12 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
13 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
14 Sobic.001G033000 ribosomal RNA large subunit methyltransferase J, putative, expressed -
15 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
16 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
17 Sobic.004G208100 expressed protein -
18 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
19 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
20 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A


Gene co-expression network
sample Sobic001G107300 Sobic001G107300 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic004G343600--Sobic001G107300 Sobic002G386300 Sobic002G386300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic009G165500 Sobic009G165500 Sobic001G505000--Sobic009G165500 Sobic001G505000--Sobic001G107300 Sobic006G149200 Sobic006G149200 Sobic001G505000--Sobic006G149200 Sobic002G289800 Sobic002G289800 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic006G115000 Sobic006G115000 Sobic001G505000--Sobic006G115000 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic002G353500--Sobic001G107300 Sobic001G040300 Sobic001G040300 Sobic002G353500--Sobic001G040300 Sobic001G081400 Sobic001G081400 Sobic002G353500--Sobic001G081400 Sobic007G022500 Sobic007G022500 Sobic002G353500--Sobic007G022500 Sobic006G108600 Sobic006G108600 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic002G353500--Sobic004G343600 Sobic009G052500 Sobic009G052500 Sobic002G353500--Sobic009G052500 Sobic006G231700 Sobic006G231700 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic006G013900--Sobic002G386300 Sobic003G109200--Sobic001G107300 Sobic003G109200--Sobic004G208100 Sobic002G387800 Sobic002G387800 Sobic003G109200--Sobic002G387800 Sobic001G521100 Sobic001G521100 Sobic003G109200--Sobic001G521100 Sobic009G169200 Sobic009G169200 Sobic003G109200--Sobic009G169200 Sobic009G232500 Sobic009G232500 Sobic003G109200--Sobic009G232500 Sobic006G095300 Sobic006G095300 Sobic003G109200--Sobic006G095300 Sobic001G432100 Sobic001G432100 Sobic003G109200--Sobic001G432100 Sobic003G297200 Sobic003G297200 Sobic003G109200--Sobic003G297200 Sobic002G351100 Sobic002G351100 Sobic001G440900--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G235700 Sobic001G235700 Sobic001G440900--Sobic001G235700 Sobic001G440900--Sobic001G107300 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700 Sobic001G347901 Sobic001G347901 Sobic001G162800--Sobic001G347901 Sobic009G233400 Sobic009G233400 Sobic001G162800--Sobic009G233400 Sobic001G162800--Sobic006G108600 Sobic001G162800--Sobic006G013900 Sobic002G054000 Sobic002G054000 Sobic001G162800--Sobic002G054000 Sobic009G173500 Sobic009G173500 Sobic001G162800--Sobic009G173500 Sobic008G135000 Sobic008G135000 Sobic001G162800--Sobic008G135000 Sobic010G076400 Sobic010G076400 Sobic001G162800--Sobic010G076400 Sobic004G342400 Sobic004G342400 Sobic001G162800--Sobic004G342400 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400
Octagon: transcription factors


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