Gene annotation
Transcriptome id Sobic.001G033000.3,Sobic.001G033000.2,Sobic.001G033000.1
Synonym Sb01g003090
Functional annotation ribosomal RNA large subunit methyltransferase J, putative, expressed
UniProt A0A1Z5S458 , A0A1Z5S442 , A0A1B6QH57
Pfam PF01728
Panther DB PTHR10920
NCBI CDD KOG4589; Cell division protein FtsJ
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0001510RNA methylation


Orthologs (automatic annotation)
TAIR AT5G13830 : FtsJ-like methyltransferase family protein
RAP-DB (Rice) LOC_Os03g60750.1 : ribosomal RNA large subunit methyltransferase J, putative, expressed
MaizeGDB (Corn) Zm00025a008821
Brachypodium KQK12415
Barley -
Wheat TraesCS5B02G494900 , TraesCS5A02G482000
Populus -


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cDNA sequences
Sobic.001G033000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
2 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
3 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
4 Sobic.003G199700 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
6 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
7 Sobic.007G209600 ENT domain containing protein, expressed -
8 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
9 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
10 Sobic.004G208100 expressed protein -
11 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
12 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
13 Sobic.002G135100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K02326: DNA polymerase epsilon subunit 3
14 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
15 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
16 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
17 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
18 Sobic.002G177500 expressed protein -
19 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
20 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3


Gene co-expression network
sample Sobic001G033000 Sobic001G033000 Sobic004G287100 Sobic004G287100 Sobic001G033000--Sobic004G287100 Sobic006G245700 Sobic006G245700 Sobic001G033000--Sobic006G245700 Sobic005G120700 Sobic005G120700 Sobic001G033000--Sobic005G120700 Sobic003G199700 Sobic003G199700 Sobic001G033000--Sobic003G199700 Sobic001G107300 Sobic001G107300 Sobic001G033000--Sobic001G107300 Sobic006G251600 Sobic006G251600 Sobic001G033000--Sobic006G251600 Sobic007G209600 Sobic007G209600 Sobic001G033000--Sobic007G209600 Sobic006G127500 Sobic006G127500 Sobic001G033000--Sobic006G127500 Sobic001G061800 Sobic001G061800 Sobic001G033000--Sobic001G061800 Sobic004G287100--Sobic007G209600 Sobic004G287100--Sobic005G120700 Sobic004G287100--Sobic001G061800 Sobic004G287100--Sobic001G033000 Sobic002G318600 Sobic002G318600 Sobic004G287100--Sobic002G318600 Sobic001G210000 Sobic001G210000 Sobic004G287100--Sobic001G210000 Sobic002G430900 Sobic002G430900 Sobic004G287100--Sobic002G430900 Sobic010G250800 Sobic010G250800 Sobic004G287100--Sobic010G250800 Sobic001G122100 Sobic001G122100 Sobic004G287100--Sobic001G122100 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic010G269300 Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic003G199700--Sobic006G245700 Sobic003G199700--Sobic001G033000 Sobic004G212700 Sobic004G212700 Sobic003G199700--Sobic004G212700 Sobic003G199700--Sobic006G251600 Sobic003G199700--Sobic001G436300 Sobic003G199700--Sobic006G127500 Sobic002G365900 Sobic002G365900 Sobic003G199700--Sobic002G365900 Sobic004G343200 Sobic004G343200 Sobic003G199700--Sobic004G343200 Sobic004G173100 Sobic004G173100 Sobic003G199700--Sobic004G173100 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic001G211500 Sobic001G211500 Sobic007G209600--Sobic001G211500 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic007G209600--Sobic001G210000 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic006G127500--Sobic001G436300 Sobic006G127500--Sobic001G157600 Sobic006G127500--Sobic006G251600 Sobic003G028400 Sobic003G028400 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic006G127500--Sobic004G343600 Sobic001G097400 Sobic001G097400 Sobic006G127500--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic006G127500--Sobic001G235700 Sobic006G127500--Sobic001G107300 Sobic001G408300 Sobic001G408300 Sobic001G061800--Sobic001G408300 Sobic003G223500 Sobic003G223500 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic001G061800--Sobic006G251600 Sobic001G061800--Sobic004G287100
Octagon: transcription factors


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