Gene annotation
Transcriptome id Sobic.004G047500.1
Synonym Sb04g004060, WHY2, ATWHY2
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
whirly transcription factor domain containing protein, expressed
UniProt C5XVD2
Pfam PF08536
Panther DB PTHR31745 PTHR31745:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71260 : WHIRLY 2
RAP-DB (Rice) LOC_Os02g06370.1 : whirly transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034860
Brachypodium KQJ93415
Barley HORVU6Hr1G025290.4 , HORVU6Hr1G025290.1 , HORVU6Hr1G025290.3 , HORVU6Hr1G025290.2
Wheat TraesCS6D02G121500 , TraesCS6A02G131700 , TraesCS6B02G160100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
2 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
3 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
4 Sobic.002G303800 expressed protein -
5 Sobic.002G135100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K02326: DNA polymerase epsilon subunit 3
6 Sobic.004G208100 expressed protein -
7 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
8 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
10 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
11 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
12 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
13 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
14 Sobic.003G310600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed -
15 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
16 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
17 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
18 Sobic.004G268800 nodulin, putative, expressed -
19 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
20 Sobic.001G255600 endonuclease/Exonuclease/phosphatase family protein, expressed -


Gene co-expression network
sample Sobic004G047500 Sobic004G047500 Sobic001G107300 Sobic001G107300 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic002G133000--Sobic002G303800 Sobic007G043400 Sobic007G043400 Sobic002G133000--Sobic007G043400 Sobic005G088900 Sobic005G088900 Sobic002G133000--Sobic005G088900 Sobic004G330600 Sobic004G330600 Sobic002G133000--Sobic004G330600 Sobic002G133000--Sobic004G208100 Sobic006G120600 Sobic006G120600 Sobic002G133000--Sobic006G120600 Sobic002G133000--Sobic001G371100 Sobic010G021900 Sobic010G021900 Sobic002G133000--Sobic010G021900 Sobic002G133000--Sobic004G047500 Sobic003G444300 Sobic003G444300 Sobic002G303800--Sobic003G444300 Sobic002G303800--Sobic006G120600 Sobic001G169800 Sobic001G169800 Sobic002G303800--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic002G303800--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic002G303800--Sobic010G103700 Sobic001G146900 Sobic001G146900 Sobic002G303800--Sobic001G146900 Sobic003G179500 Sobic003G179500 Sobic002G303800--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic002G303800--Sobic006G051000 Sobic001G083300 Sobic001G083300 Sobic002G303800--Sobic001G083300 Sobic009G087300 Sobic009G087300 Sobic002G135100--Sobic009G087300 Sobic002G135100--Sobic003G444300 Sobic003G212600 Sobic003G212600 Sobic002G135100--Sobic003G212600 Sobic002G135100--Sobic004G047500 Sobic007G209600 Sobic007G209600 Sobic002G135100--Sobic007G209600 Sobic002G135100--Sobic002G303800 Sobic002G152900 Sobic002G152900 Sobic002G135100--Sobic002G152900 Sobic002G135100--Sobic001G061800 Sobic001G408300 Sobic001G408300 Sobic002G135100--Sobic001G408300 Sobic004G208100--Sobic010G021900 Sobic004G208100--Sobic003G444300 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic004G208100--Sobic002G133000 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic002G319200 Sobic002G319200 Sobic004G336600--Sobic002G319200 Sobic009G012700 Sobic009G012700 Sobic004G336600--Sobic009G012700 Sobic002G045100 Sobic002G045100 Sobic004G336600--Sobic002G045100 Sobic004G336600--Sobic004G047500 Sobic004G336600--Sobic001G169800 Sobic006G134900 Sobic006G134900 Sobic004G336600--Sobic006G134900 Sobic007G183800 Sobic007G183800 Sobic004G336600--Sobic007G183800 Sobic004G336600--Sobic001G505000 Sobic006G140100 Sobic006G140100 Sobic004G336600--Sobic006G140100 Sobic008G163400 Sobic008G163400 Sobic002G267600--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic002G267600--Sobic003G239000 Sobic001G149100 Sobic001G149100 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic003G299200 Sobic003G299200 Sobic002G267600--Sobic003G299200 Sobic008G179000 Sobic008G179000 Sobic002G267600--Sobic008G179000 Sobic002G267600--Sobic004G208100 Sobic002G267600--Sobic001G408300 Sobic002G267600--Sobic004G047500 Sobic001G061800--Sobic001G408300 Sobic003G223500 Sobic003G223500 Sobic001G061800--Sobic003G223500 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic001G061800--Sobic006G251600 Sobic004G287100 Sobic004G287100 Sobic001G061800--Sobic004G287100
Octagon: transcription factors


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