Gene annotation
Transcriptome id Sobic.001G412500.1
Synonym Sb01g038880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WP84
Pfam -
Panther DB PTHR12381
NCBI CDD -
KEGG Orthology K18732; SARNP, CIP29, SAP domain-containing ribonucleoprotein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02770 : -
RAP-DB (Rice) LOC_Os03g17490.2 : expressed protein
MaizeGDB (Corn) Zm00025a001914
Brachypodium KQK22238
Barley HORVU4Hr1G057700.4 , HORVU4Hr1G057700.1 , HORVU4Hr1G057700.3 , HORVU4Hr1G057700.2
Wheat TraesCS4D02G200600 , TraesCS4A02G104400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
2 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
3 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
4 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
5 Sobic.004G208100 expressed protein -
6 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
7 Sobic.001G150033 - -
8 Sobic.001G261549 - -
9 Sobic.001G528600 remorin family protein, putative, expressed -
10 Sobic.001G040300 expressed protein -
11 Sobic.004G036800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
12 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
13 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
14 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
15 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
16 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
17 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
18 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
19 Sobic.010G168900 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
20 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1


Gene co-expression network
sample Sobic001G412500 Sobic001G412500 Sobic009G165500 Sobic009G165500 Sobic001G412500--Sobic009G165500 Sobic003G084300 Sobic003G084300 Sobic001G412500--Sobic003G084300 Sobic004G343600 Sobic004G343600 Sobic001G412500--Sobic004G343600 Sobic006G013900 Sobic006G013900 Sobic001G412500--Sobic006G013900 Sobic004G208100 Sobic004G208100 Sobic001G412500--Sobic004G208100 Sobic001G107300 Sobic001G107300 Sobic001G412500--Sobic001G107300 Sobic001G150033 Sobic001G150033 Sobic001G412500--Sobic001G150033 Sobic001G261549 Sobic001G261549 Sobic001G412500--Sobic001G261549 Sobic001G528600 Sobic001G528600 Sobic001G412500--Sobic001G528600 Sobic009G165500--Sobic003G084300 Sobic001G505000 Sobic001G505000 Sobic009G165500--Sobic001G505000 Sobic006G149200 Sobic006G149200 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic001G429000 Sobic001G429000 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic003G084300--Sobic009G165500 Sobic009G189200 Sobic009G189200 Sobic003G084300--Sobic009G189200 Sobic003G011100 Sobic003G011100 Sobic003G084300--Sobic003G011100 Sobic002G385400 Sobic002G385400 Sobic003G084300--Sobic002G385400 Sobic010G265900 Sobic010G265900 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic006G200000 Sobic006G200000 Sobic003G084300--Sobic006G200000 Sobic006G102900 Sobic006G102900 Sobic003G084300--Sobic006G102900 Sobic004G343600--Sobic001G107300 Sobic002G386300 Sobic002G386300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic006G231700 Sobic006G231700 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic006G013900--Sobic002G386300 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic001G238900 Sobic001G238900 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic002G246900 Sobic002G246900 Sobic004G208100--Sobic002G246900 Sobic001G107300--Sobic004G343600 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300 Sobic001G150033--Sobic001G412500 Sobic001G442700 Sobic001G442700 Sobic001G150033--Sobic001G442700 Sobic002G267600 Sobic002G267600 Sobic001G150033--Sobic002G267600 Sobic001G282000 Sobic001G282000 Sobic001G150033--Sobic001G282000 Sobic006G029400 Sobic006G029400 Sobic001G150033--Sobic006G029400 Sobic001G116000 Sobic001G116000 Sobic001G150033--Sobic001G116000 Sobic010G168900 Sobic010G168900 Sobic001G150033--Sobic010G168900 Sobic001G150033--Sobic003G084300 Sobic001G150033--Sobic009G189200 Sobic001G261549--Sobic006G102900 Sobic004G285900 Sobic004G285900 Sobic001G261549--Sobic004G285900 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic009G194900 Sobic009G194900 Sobic001G261549--Sobic009G194900 Sobic003G107200 Sobic003G107200 Sobic001G261549--Sobic003G107200 Sobic001G078600 Sobic001G078600 Sobic001G261549--Sobic001G078600 Sobic007G154500 Sobic007G154500 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic001G528600--Sobic001G078600 Sobic001G107200 Sobic001G107200 Sobic001G528600--Sobic001G107200 Sobic002G280700 Sobic002G280700 Sobic001G528600--Sobic002G280700 Sobic004G152200 Sobic004G152200 Sobic001G528600--Sobic004G152200 Sobic001G528600--Sobic006G191700 Sobic010G274000 Sobic010G274000 Sobic001G528600--Sobic010G274000 Sobic004G331200 Sobic004G331200 Sobic001G528600--Sobic004G331200 Sobic005G047100 Sobic005G047100 Sobic001G528600--Sobic005G047100 Sobic001G528600--Sobic006G102900
Octagon: transcription factors


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