Gene annotation
Transcriptome id Sobic.001G505000.2,Sobic.001G505000.3
Synonym CKS1AT, CKS1, Sb01g047130
Functional annotation cyclin-dependent kinases regulatory subunit 1, putative, expressed
UniProt C5WXY8
Pfam PF01111
Panther DB PTHR23415
NCBI CDD KOG3484; Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins
KEGG Orthology K02219; cyclin-dependent kinase regulatory subunit CKS1
Gene Ontology GO:0016538; cyclin-dependent protein serine/threonine kinase regulator activity GO:0007049cell cycle


Orthologs (automatic annotation)
TAIR AT2G27970 : CDK-subunit 2
RAP-DB (Rice) LOC_Os03g05300.1 : cyclin-dependent kinases regulatory subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a000621 , Zm00025a053415
Brachypodium KQK23666 , KQK23667
Barley HORVU4Hr1G079310.4 , HORVU4Hr1G079310.5 , HORVU4Hr1G079310.2 , HORVU4Hr1G079310.3 , HORVU4Hr1G079310.1
Wheat TraesCS4B02G311000 , TraesCS4A02G410900 , TraesCS4D02G308900
Populus PNT42520 , PNT42519


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cDNA sequences
Sobic.001G505000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
2 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
3 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
4 Sobic.002G289800 HMG1/2, putative, expressed -
5 Sobic.010G222100 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
7 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
8 Sobic.001G429000 harpin-induced protein 1 domain containing protein, expressed -
9 Sobic.003G174700 expressed protein -
10 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
11 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.003G140000 "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659868)@S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
13 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
14 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
15 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
16 Sobic.003G279100 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
17 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
18 Sobic.004G217450 - -
19 Sobic.001G261549 - -
20 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other


Gene co-expression network
sample Sobic001G505000 Sobic001G505000 Sobic009G165500 Sobic009G165500 Sobic001G505000--Sobic009G165500 Sobic001G107300 Sobic001G107300 Sobic001G505000--Sobic001G107300 Sobic006G149200 Sobic006G149200 Sobic001G505000--Sobic006G149200 Sobic002G289800 Sobic002G289800 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic006G115000 Sobic006G115000 Sobic001G505000--Sobic006G115000 Sobic006G013900 Sobic006G013900 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic003G084300 Sobic003G084300 Sobic009G165500--Sobic003G084300 Sobic009G165500--Sobic001G505000 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic001G412500 Sobic001G412500 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic002G353500 Sobic002G353500 Sobic001G107300--Sobic002G353500 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic006G149200--Sobic006G115000 Sobic002G286900 Sobic002G286900 Sobic006G149200--Sobic002G286900 Sobic003G018600 Sobic003G018600 Sobic006G149200--Sobic003G018600 Sobic003G073900 Sobic003G073900 Sobic006G149200--Sobic003G073900 Sobic004G217450 Sobic004G217450 Sobic006G149200--Sobic004G217450 Sobic003G150000 Sobic003G150000 Sobic006G149200--Sobic003G150000 Sobic006G231700 Sobic006G231700 Sobic006G149200--Sobic006G231700 Sobic005G110800 Sobic005G110800 Sobic006G149200--Sobic005G110800 Sobic006G159600 Sobic006G159600 Sobic006G149200--Sobic006G159600 Sobic001G289900 Sobic001G289900 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic010G222100--Sobic002G289800 Sobic009G033800 Sobic009G033800 Sobic010G222100--Sobic009G033800 Sobic002G353200 Sobic002G353200 Sobic010G222100--Sobic002G353200 Sobic010G215800 Sobic010G215800 Sobic010G222100--Sobic010G215800 Sobic010G222100--Sobic001G289900 Sobic010G222100--Sobic001G505000 Sobic005G129700 Sobic005G129700 Sobic010G222100--Sobic005G129700 Sobic010G222100--Sobic007G132900 Sobic003G279100 Sobic003G279100 Sobic010G222100--Sobic003G279100 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic006G013900--Sobic004G343600 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic001G429500 Sobic001G429500 Sobic001G429000--Sobic001G429500 Sobic001G399300 Sobic001G399300 Sobic001G429000--Sobic001G399300 Sobic001G429000--Sobic009G165500 Sobic009G157600 Sobic009G157600 Sobic001G429000--Sobic009G157600 Sobic006G200000 Sobic006G200000 Sobic001G429000--Sobic006G200000 Sobic001G429000--Sobic001G505000 Sobic001G261549 Sobic001G261549 Sobic001G429000--Sobic001G261549 Sobic003G423000 Sobic003G423000 Sobic001G429000--Sobic003G423000 Sobic009G194900 Sobic009G194900 Sobic001G429000--Sobic009G194900 Sobic003G174700--Sobic004G217450 Sobic003G034600 Sobic003G034600 Sobic003G174700--Sobic003G034600 Sobic006G137800 Sobic006G137800 Sobic003G174700--Sobic006G137800 Sobic006G260300 Sobic006G260300 Sobic003G174700--Sobic006G260300 Sobic006G191800 Sobic006G191800 Sobic003G174700--Sobic006G191800 Sobic010G221300 Sobic010G221300 Sobic003G174700--Sobic010G221300 Sobic003G160700 Sobic003G160700 Sobic003G174700--Sobic003G160700 Sobic001G529400 Sobic001G529400 Sobic003G174700--Sobic001G529400 Sobic001G439100 Sobic001G439100 Sobic003G174700--Sobic001G439100
Octagon: transcription factors


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