Gene annotation
Transcriptome id Sobic.003G140000.1
Synonym MAT2, SAM2, SAM-2, AtSAM2, Sb03g011930
Functional annotation "OsSAMS1(Ortholog in rice:Chen et al., 2013)" (PubMedID : 31659868)
S-adenosylmethionine synthetase, putative, expressed
UniProt C5XI18
Pfam PF00438 PF02772 PF02773
Panther DB PTHR11964
NCBI CDD -
KEGG Orthology K00789; S-adenosylmethionine synthetase
Gene Ontology GO:0006556; S-adenosylmethionine biosynthetic process GO:0004478methionine adenosyltransferase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G02500 : S-adenosylmethionine synthetase 1
RAP-DB (Rice) LOC_Os01g18860.2 : S-adenosylmethionine synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a038140 , Zm00025a055322
Brachypodium KQK04184 , KQK04025 , KQK04183
Barley HORVU6Hr1G034650.1
Wheat TraesCS6D02G159100
Populus PNT31226 , PNT31227


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
2 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
3 Sobic.001G371900 copper/zinc superoxide dismutase(PubMedID : 23915383)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
4 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
5 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
6 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
7 Sobic.003G073900 expressed protein -
8 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
9 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
10 Sobic.010G267900 expressed protein -
11 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
12 Sobic.003G254800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
14 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
15 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
16 Sobic.004G064900 gp176, putative, expressed -
17 Sobic.004G033800 expressed protein -
18 Sobic.002G407900 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
19 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
20 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic003G140000 Sobic003G140000 Sobic007G163700 Sobic007G163700 Sobic003G140000--Sobic007G163700 Sobic006G149200 Sobic006G149200 Sobic003G140000--Sobic006G149200 Sobic001G371900 Sobic001G371900 Sobic003G140000--Sobic001G371900 Sobic001G505000 Sobic001G505000 Sobic003G140000--Sobic001G505000 Sobic006G115000 Sobic006G115000 Sobic003G140000--Sobic006G115000 Sobic007G195800 Sobic007G195800 Sobic003G140000--Sobic007G195800 Sobic003G073900 Sobic003G073900 Sobic003G140000--Sobic003G073900 Sobic009G165500 Sobic009G165500 Sobic003G140000--Sobic009G165500 Sobic003G018600 Sobic003G018600 Sobic003G140000--Sobic003G018600 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic001G517600 Sobic001G517600 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic001G128400 Sobic001G128400 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic007G163700--Sobic003G018600 Sobic006G149200--Sobic006G115000 Sobic002G286900 Sobic002G286900 Sobic006G149200--Sobic002G286900 Sobic006G149200--Sobic003G018600 Sobic006G149200--Sobic003G073900 Sobic004G217450 Sobic004G217450 Sobic006G149200--Sobic004G217450 Sobic003G150000 Sobic003G150000 Sobic006G149200--Sobic003G150000 Sobic006G149200--Sobic006G231700 Sobic005G110800 Sobic005G110800 Sobic006G149200--Sobic005G110800 Sobic006G159600 Sobic006G159600 Sobic006G149200--Sobic006G159600 Sobic002G407900 Sobic002G407900 Sobic001G371900--Sobic002G407900 Sobic006G137800 Sobic006G137800 Sobic001G371900--Sobic006G137800 Sobic003G072300 Sobic003G072300 Sobic001G371900--Sobic003G072300 Sobic001G371900--Sobic007G195800 Sobic004G065500 Sobic004G065500 Sobic001G371900--Sobic004G065500 Sobic003G357300 Sobic003G357300 Sobic001G371900--Sobic003G357300 Sobic002G389400 Sobic002G389400 Sobic001G371900--Sobic002G389400 Sobic001G371900--Sobic006G159600 Sobic004G306300 Sobic004G306300 Sobic001G371900--Sobic004G306300 Sobic001G505000--Sobic009G165500 Sobic001G107300 Sobic001G107300 Sobic001G505000--Sobic001G107300 Sobic001G505000--Sobic006G149200 Sobic002G289800 Sobic002G289800 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic001G505000--Sobic006G115000 Sobic006G013900 Sobic006G013900 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic007G195800--Sobic006G137800 Sobic008G139600 Sobic008G139600 Sobic007G195800--Sobic008G139600 Sobic001G502900 Sobic001G502900 Sobic007G195800--Sobic001G502900 Sobic007G195800--Sobic002G389400 Sobic006G191800 Sobic006G191800 Sobic007G195800--Sobic006G191800 Sobic002G323300 Sobic002G323300 Sobic007G195800--Sobic002G323300 Sobic007G195800--Sobic004G065500 Sobic001G115300 Sobic001G115300 Sobic007G195800--Sobic001G115300 Sobic005G113300 Sobic005G113300 Sobic007G195800--Sobic005G113300 Sobic003G073900--Sobic006G115000 Sobic003G073900--Sobic003G018600 Sobic010G054200 Sobic010G054200 Sobic003G073900--Sobic010G054200 Sobic003G073900--Sobic002G286900 Sobic003G073900--Sobic005G110800 Sobic003G073900--Sobic003G150000 Sobic001G226500 Sobic001G226500 Sobic003G073900--Sobic001G226500 Sobic003G073900--Sobic003G249700 Sobic001G225700 Sobic001G225700 Sobic003G073900--Sobic001G225700 Sobic003G084300 Sobic003G084300 Sobic009G165500--Sobic003G084300 Sobic009G165500--Sobic001G505000 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic009G165500--Sobic010G054200 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic001G412500 Sobic001G412500 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic003G018600--Sobic002G286900 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G018600--Sobic003G249700
Octagon: transcription factors


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