Gene annotation
Transcriptome id Sobic.004G064900.1
Synonym Sb04g005410
Functional annotation gp176, putative, expressed
UniProt A0A194YN27
Pfam PF11443
Panther DB PTHR31373 PTHR31373:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13210 : Uncharacterised conserved protein UCP015417, vWA
RAP-DB (Rice) LOC_Os02g08330.1 : gp176, putative, expressed
MaizeGDB (Corn) Zm00025a034736
Brachypodium KQJ93643 , KQK16853 , KQK16852 , KQK19864
Barley HORVU6Hr1G013080.4 , HORVU6Hr1G013080.1 , HORVU6Hr1G013080.2 , HORVU6Hr1G013080.3 , HORVU5Hr1G079390.2 , HORVU5Hr1G079390.1 , HORVU7Hr1G112960.2 , HORVU7Hr1G112960.3 , HORVU7Hr1G112960.1 , HORVU7Hr1G112970.1 , HORVU6Hr1G029540.1
Wheat TraesCS7B02G410900 , TraesCS7D02G490900 , TraesCS7A02G503000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070800 expressed protein -
2 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
4 Sobic.003G088400 Up-reguralion under drought(PubMedID : 24916767)@BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed -
5 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.007G061300 - -
7 Sobic.002G199650 - -
8 Sobic.001G339700 expressed protein -
9 Sobic.001G331200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
10 Sobic.006G137800 expressed protein -
11 Sobic.004G148200 Cupin domain containing protein, expressed -
12 Sobic.001G187200 expressed protein -
13 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
14 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
15 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
16 Sobic.007G215600 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
17 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
18 Sobic.002G407900 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
19 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
20 Sobic.002G139300 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G064900 Sobic004G064900 Sobic001G070800 Sobic001G070800 Sobic004G064900--Sobic001G070800 Sobic004G189500 Sobic004G189500 Sobic004G064900--Sobic004G189500 Sobic006G159600 Sobic006G159600 Sobic004G064900--Sobic006G159600 Sobic003G088400 Sobic003G088400 Sobic004G064900--Sobic003G088400 Sobic002G348100 Sobic002G348100 Sobic004G064900--Sobic002G348100 Sobic007G061300 Sobic007G061300 Sobic004G064900--Sobic007G061300 Sobic002G199650 Sobic002G199650 Sobic004G064900--Sobic002G199650 Sobic001G339700 Sobic001G339700 Sobic004G064900--Sobic001G339700 Sobic001G331200 Sobic001G331200 Sobic004G064900--Sobic001G331200 Sobic003G297600 Sobic003G297600 Sobic001G070800--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic001G070800--Sobic009G077800 Sobic003G393700 Sobic003G393700 Sobic001G070800--Sobic003G393700 Sobic002G416600 Sobic002G416600 Sobic001G070800--Sobic002G416600 Sobic009G139400 Sobic009G139400 Sobic001G070800--Sobic009G139400 Sobic001G177800 Sobic001G177800 Sobic001G070800--Sobic001G177800 Sobic001G317200 Sobic001G317200 Sobic001G070800--Sobic001G317200 Sobic006G099900 Sobic006G099900 Sobic001G070800--Sobic006G099900 Sobic001G252300 Sobic001G252300 Sobic001G070800--Sobic001G252300 Sobic004G148200 Sobic004G148200 Sobic004G189500--Sobic004G148200 Sobic002G055700 Sobic002G055700 Sobic004G189500--Sobic002G055700 Sobic004G189400 Sobic004G189400 Sobic004G189500--Sobic004G189400 Sobic005G091500 Sobic005G091500 Sobic004G189500--Sobic005G091500 Sobic006G039100 Sobic006G039100 Sobic004G189500--Sobic006G039100 Sobic004G189500--Sobic003G297600 Sobic005G029200 Sobic005G029200 Sobic004G189500--Sobic005G029200 Sobic009G231000 Sobic009G231000 Sobic004G189500--Sobic009G231000 Sobic010G213700 Sobic010G213700 Sobic004G189500--Sobic010G213700 Sobic006G137800 Sobic006G137800 Sobic006G159600--Sobic006G137800 Sobic006G159600--Sobic002G348100 Sobic003G125650 Sobic003G125650 Sobic006G159600--Sobic003G125650 Sobic006G067800 Sobic006G067800 Sobic006G159600--Sobic006G067800 Sobic004G321300 Sobic004G321300 Sobic006G159600--Sobic004G321300 Sobic008G025600 Sobic008G025600 Sobic006G159600--Sobic008G025600 Sobic007G197800 Sobic007G197800 Sobic006G159600--Sobic007G197800 Sobic009G159400 Sobic009G159400 Sobic006G159600--Sobic009G159400 Sobic001G464900 Sobic001G464900 Sobic006G159600--Sobic001G464900 Sobic008G181100 Sobic008G181100 Sobic003G088400--Sobic008G181100 Sobic006G153100 Sobic006G153100 Sobic003G088400--Sobic006G153100 Sobic001G402050 Sobic001G402050 Sobic003G088400--Sobic001G402050 Sobic003G088400--Sobic006G137800 Sobic003G088400--Sobic001G070800 Sobic003G088400--Sobic002G199650 Sobic003G088400--Sobic006G159600 Sobic003G117600 Sobic003G117600 Sobic003G088400--Sobic003G117600 Sobic003G088400--Sobic004G148200 Sobic002G372400 Sobic002G372400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic001G055600 Sobic001G055600 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic007G061300--Sobic004G189400 Sobic002G263400 Sobic002G263400 Sobic007G061300--Sobic002G263400 Sobic001G187200 Sobic001G187200 Sobic007G061300--Sobic001G187200 Sobic004G148000 Sobic004G148000 Sobic007G061300--Sobic004G148000 Sobic007G061300--Sobic004G148200 Sobic007G061300--Sobic005G029200 Sobic004G088551 Sobic004G088551 Sobic007G061300--Sobic004G088551 Sobic010G084400 Sobic010G084400 Sobic007G061300--Sobic010G084400 Sobic007G227300 Sobic007G227300 Sobic007G061300--Sobic007G227300 Sobic002G199650--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic002G199650--Sobic003G252800 Sobic002G199650--Sobic005G091500 Sobic002G199650--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic002G199650--Sobic003G286600 Sobic002G199650--Sobic006G153100 Sobic002G199650--Sobic001G317200 Sobic002G183200 Sobic002G183200 Sobic002G199650--Sobic002G183200 Sobic002G199650--Sobic001G070800 Sobic001G533400 Sobic001G533400 Sobic001G339700--Sobic001G533400 Sobic001G339700--Sobic001G317200 Sobic007G145600 Sobic007G145600 Sobic001G339700--Sobic007G145600 Sobic001G339700--Sobic010G084400 Sobic001G339700--Sobic003G252800 Sobic001G339700--Sobic006G099900 Sobic001G339700--Sobic008G025600 Sobic005G101800 Sobic005G101800 Sobic001G339700--Sobic005G101800 Sobic005G084600 Sobic005G084600 Sobic001G339700--Sobic005G084600 Sobic001G331200--Sobic004G148200 Sobic006G268800 Sobic006G268800 Sobic001G331200--Sobic006G268800 Sobic002G017800 Sobic002G017800 Sobic001G331200--Sobic002G017800 Sobic001G331200--Sobic007G227300 Sobic002G247600 Sobic002G247600 Sobic001G331200--Sobic002G247600 Sobic006G103000 Sobic006G103000 Sobic001G331200--Sobic006G103000 Sobic009G111000 Sobic009G111000 Sobic001G331200--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic001G331200--Sobic001G318500 Sobic001G331200--Sobic005G091500
Octagon: transcription factors


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