Gene annotation
| Transcriptome id | Sobic.003G088400.1 |
|---|---|
| Synonym | Sb03g007420 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed |
| UniProt | C5XQX6 |
| Pfam | - |
| Panther DB | PTHR37378 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os01g04040.1 : BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023656 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G088400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G181100 | - | - |
| 2 | Sobic.006G153100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 3 | Sobic.001G402050 | - | K02979: RP-S28e, small subunit ribosomal protein S28e |
| 4 | Sobic.006G137800 | expressed protein | - |
| 5 | Sobic.001G070800 | expressed protein | - |
| 6 | Sobic.002G199650 | - | - |
| 7 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 8 | Sobic.003G117600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed | - |
| 9 | Sobic.004G148200 | Cupin domain containing protein, expressed | - |
| 10 | Sobic.001G177800 | ribosomal protein, putative, expressed | K02866: RP-L10e, large subunit ribosomal protein L10e |
| 11 | Sobic.002G200600 | 60S ribosomal protein L34, putative, expressed | K02915: RP-L34e, large subunit ribosomal protein L34e |
| 12 | Sobic.010G084400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 13 | Sobic.002G055700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 14 | Sobic.006G067800 | 60S acidic ribosomal protein, putative, expressed | K02943: RP-LP2, large subunit ribosomal protein LP2 |
| 15 | Sobic.003G303100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 16 | Sobic.004G189400 | expressed protein | - |
| 17 | Sobic.001G318600 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 18 | Sobic.001G339700 | expressed protein | - |
| 19 | Sobic.006G099900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed | - |
| 20 | Sobic.002G416600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
Gene co-expression network
Octagon: transcription factors
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