Gene annotation
| Transcriptome id | Sobic.006G260300.1 |
|---|---|
| Synonym | RD21A, RD21, Sb06g032320 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) oryzain beta chain precursor, putative, expressed |
| UniProt | C5YA35 |
| Pfam | PF00396 PF08246 PF00112 |
| Panther DB | PTHR12411 PTHR12411:SF343 |
| NCBI CDD | KOG1543; Cysteine proteinase Cathepsin L |
| KEGG Orthology | - |
| Gene Ontology | GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT5G43060 : Granulin repeat cysteine protease family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g57440.1 : oryzain beta chain precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009373 , Zm00025a057341 |
| Brachypodium | KQJ85207 |
| Barley | HORVU7Hr1G055310.2 , HORVU7Hr1G055310.1 , HORVU2Hr1G121440.8 , HORVU2Hr1G121440.6 , HORVU2Hr1G121440.7 , HORVU2Hr1G121440.4 , HORVU2Hr1G121440.5 , HORVU2Hr1G121440.2 , HORVU2Hr1G121440.3 |
| Wheat | TraesCS2D02G546600 , TraesCS2A02G545700 , TraesCS2B02G576300 |
| Populus | - |
JBrowse
| Sobic.006G260300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G080900 | expressed protein | - |
| 2 | Sobic.008G025600 | cyclin-dependent kinase B1-1, putative, expressed | K07760: cyclin-dependent kinase |
| 3 | Sobic.003G174700 | expressed protein | - |
| 4 | Sobic.004G217450 | - | - |
| 5 | Sobic.006G137800 | expressed protein | - |
| 6 | Sobic.004G064900 | gp176, putative, expressed | - |
| 7 | Sobic.006G149200 | LSM domain containing protein, expressed | K11096: SNRPD2, small nuclear ribonucleoprotein D2 |
| 8 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 9 | Sobic.004G274900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed | K11855: ubiquitin carboxyl-terminal hydrolase 36/42 |
| 10 | Sobic.004G069200 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed | - |
| 11 | Sobic.003G088400 | Up-reguralion under drought(PubMedID : 24916767)@BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed | - |
| 12 | Sobic.003G249900 | metallo-beta-lactamase family protein, putative, expressed | K17725: sulfur dioxygenase |
| 13 | Sobic.002G201600 | methyltransferase, putative, expressed | - |
| 14 | Sobic.003G436700 | 40S ribosomal protein S10, putative, expressed | K02947: RP-S10e, small subunit ribosomal protein S10e |
| 15 | Sobic.002G199650 | - | - |
| 16 | Sobic.010G265900 | novel plant SNARE 11, putative, expressed | K08494: novel plant SNARE |
| 17 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 18 | Sobic.003G027400 | VQ domain containing protein, putative, expressed | - |
| 19 | Sobic.003G034600 | CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K08850: aurora kinase, other |
| 20 | Sobic.002G074200 | ribosomal protein, putative, expressed | K02981: RP-S2e, small subunit ribosomal protein S2e |
Gene co-expression network
Octagon: transcription factors
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