Gene annotation
Transcriptome id Sobic.003G249900.1
Synonym ETHE1, GLY3, Sb03g030620, GLX2-3
Functional annotation metallo-beta-lactamase family protein, putative, expressed
UniProt C5XG02
Pfam PF00753
Panther DB PTHR11935 PTHR11935:SF112
NCBI CDD KOG0814; Glyoxylase
KEGG Orthology K17725; sulfur dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53580 : glyoxalase II 3
RAP-DB (Rice) LOC_Os01g47690.1 : metallo-beta-lactamase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028126
Brachypodium KQK09095
Barley HORVU3Hr1G060850.4 , HORVU3Hr1G060850.6 , HORVU3Hr1G060850.10 , HORVU3Hr1G060920.1 , HORVU3Hr1G060920.2 , HORVU3Hr1G060920.3
Wheat TraesCS3D02G244100 , TraesCS3A02G247300 , TraesCS3A02G247300 , TraesCS3B02G272000 , TraesCS3B02G272000
Populus -


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cDNA sequences
Sobic.003G249900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G080900 expressed protein -
2 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
4 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
5 Sobic.008G025600 cyclin-dependent kinase B1-1, putative, expressed K07760: cyclin-dependent kinase
6 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
7 Sobic.002G092200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
8 Sobic.001G368800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@diphthine synthase, putative, expressed K00586: diphthine methyl ester synthase
9 Sobic.006G261900 expressed protein -
10 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
11 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
12 Sobic.001G161000 AGG2, putative, expressed -
13 Sobic.007G135201 - -
14 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
15 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
16 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
17 Sobic.002G199650 - -
18 Sobic.005G084600 ARGOS, putative, expressed -
19 Sobic.001G339700 expressed protein -
20 Sobic.008G041400 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family


Gene co-expression network
sample Sobic003G249900 Sobic003G249900 Sobic005G080900 Sobic005G080900 Sobic003G249900--Sobic005G080900 Sobic004G274900 Sobic004G274900 Sobic003G249900--Sobic004G274900 Sobic006G260300 Sobic006G260300 Sobic003G249900--Sobic006G260300 Sobic010G257100 Sobic010G257100 Sobic003G249900--Sobic010G257100 Sobic008G025600 Sobic008G025600 Sobic003G249900--Sobic008G025600 Sobic003G072300 Sobic003G072300 Sobic003G249900--Sobic003G072300 Sobic002G092200 Sobic002G092200 Sobic003G249900--Sobic002G092200 Sobic001G368800 Sobic001G368800 Sobic003G249900--Sobic001G368800 Sobic006G261900 Sobic006G261900 Sobic003G249900--Sobic006G261900 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic004G274900--Sobic001G368800 Sobic004G274900--Sobic008G025600 Sobic004G274900--Sobic005G080900 Sobic004G217450 Sobic004G217450 Sobic004G274900--Sobic004G217450 Sobic010G023800 Sobic010G023800 Sobic004G274900--Sobic010G023800 Sobic008G112600 Sobic008G112600 Sobic004G274900--Sobic008G112600 Sobic005G084600 Sobic005G084600 Sobic004G274900--Sobic005G084600 Sobic006G159600 Sobic006G159600 Sobic004G274900--Sobic006G159600 Sobic002G385400 Sobic002G385400 Sobic004G274900--Sobic002G385400 Sobic006G260300--Sobic005G080900 Sobic006G260300--Sobic008G025600 Sobic003G174700 Sobic003G174700 Sobic006G260300--Sobic003G174700 Sobic006G260300--Sobic004G217450 Sobic006G137800 Sobic006G137800 Sobic006G260300--Sobic006G137800 Sobic004G064900 Sobic004G064900 Sobic006G260300--Sobic004G064900 Sobic006G149200 Sobic006G149200 Sobic006G260300--Sobic006G149200 Sobic006G260300--Sobic006G159600 Sobic006G260300--Sobic004G274900 Sobic001G019900 Sobic001G019900 Sobic010G257100--Sobic001G019900 Sobic001G084900 Sobic001G084900 Sobic010G257100--Sobic001G084900 Sobic003G321700 Sobic003G321700 Sobic010G257100--Sobic003G321700 Sobic003G249800 Sobic003G249800 Sobic010G257100--Sobic003G249800 Sobic005G092800 Sobic005G092800 Sobic010G257100--Sobic005G092800 Sobic010G243200 Sobic010G243200 Sobic010G257100--Sobic010G243200 Sobic004G026400 Sobic004G026400 Sobic010G257100--Sobic004G026400 Sobic010G153100 Sobic010G153100 Sobic010G257100--Sobic010G153100 Sobic010G257100--Sobic003G072300 Sobic008G025600--Sobic006G137800 Sobic004G205100 Sobic004G205100 Sobic008G025600--Sobic004G205100 Sobic001G339700 Sobic001G339700 Sobic008G025600--Sobic001G339700 Sobic006G099900 Sobic006G099900 Sobic008G025600--Sobic006G099900 Sobic002G200600 Sobic002G200600 Sobic008G025600--Sobic002G200600 Sobic003G417800 Sobic003G417800 Sobic008G025600--Sobic003G417800 Sobic009G183400 Sobic009G183400 Sobic008G025600--Sobic009G183400 Sobic007G227300 Sobic007G227300 Sobic008G025600--Sobic007G227300 Sobic007G184600 Sobic007G184600 Sobic008G025600--Sobic007G184600 Sobic002G081600 Sobic002G081600 Sobic003G072300--Sobic002G081600 Sobic003G072300--Sobic004G205100 Sobic002G187500 Sobic002G187500 Sobic003G072300--Sobic002G187500 Sobic003G209000 Sobic003G209000 Sobic003G072300--Sobic003G209000 Sobic002G190900 Sobic002G190900 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G072300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic003G072300--Sobic003G155400 Sobic003G072300--Sobic002G379500 Sobic002G315400 Sobic002G315400 Sobic002G092200--Sobic002G315400 Sobic010G265900 Sobic010G265900 Sobic002G092200--Sobic010G265900 Sobic003G412800 Sobic003G412800 Sobic002G092200--Sobic003G412800 Sobic002G092200--Sobic003G249900 Sobic004G095700 Sobic004G095700 Sobic002G092200--Sobic004G095700 Sobic002G300000 Sobic002G300000 Sobic002G092200--Sobic002G300000 Sobic006G200000 Sobic006G200000 Sobic002G092200--Sobic006G200000 Sobic002G351100 Sobic002G351100 Sobic002G092200--Sobic002G351100 Sobic002G092200--Sobic005G080900 Sobic001G368800--Sobic004G274900 Sobic004G176600 Sobic004G176600 Sobic001G368800--Sobic004G176600 Sobic001G368800--Sobic005G084600 Sobic001G368800--Sobic005G080900 Sobic006G211200 Sobic006G211200 Sobic001G368800--Sobic006G211200 Sobic001G368800--Sobic010G257100 Sobic001G403000 Sobic001G403000 Sobic001G368800--Sobic001G403000 Sobic001G368800--Sobic010G023800 Sobic010G209900 Sobic010G209900 Sobic001G368800--Sobic010G209900 Sobic006G262300 Sobic006G262300 Sobic006G261900--Sobic006G262300 Sobic006G261900--Sobic003G436700 Sobic006G261900--Sobic002G379500 Sobic006G261900--Sobic003G109600 Sobic010G251600 Sobic010G251600 Sobic006G261900--Sobic010G251600 Sobic006G261900--Sobic006G213000 Sobic006G261900--Sobic002G081600 Sobic009G173500 Sobic009G173500 Sobic006G261900--Sobic009G173500 Sobic006G261900--Sobic001G016500
Octagon: transcription factors


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