Gene annotation
Transcriptome id Sobic.002G092200.2
Synonym VAMP724, Sb02g007620, ATVAMP724
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt A0A1B6QA43
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF72
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08511; vesicle-associated membrane protein 72
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G15780 : vesicle-associated membrane protein 724
RAP-DB (Rice) LOC_Os07g14540.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a045515 , Zm00025a013613
Brachypodium KQK20245
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G315400 expressed protein -
2 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
3 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
4 Sobic.003G249900 metallo-beta-lactamase family protein, putative, expressed K17725: sulfur dioxygenase
5 Sobic.004G095700 cysteine synthase, putative, expressed K01738: cysteine synthase
6 Sobic.002G300000 expansin precursor, putative, expressed -
7 Sobic.006G200000 RNA recognition motif, putative, expressed -
8 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
9 Sobic.005G080900 expressed protein -
10 Sobic.006G260300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@oryzain beta chain precursor, putative, expressed -
11 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
12 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
13 Sobic.006G263400 uracil-DNA glycosylase, putative, expressed K03648: UNG, uracil-DNA glycosylase
14 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
15 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
16 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
17 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
18 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
19 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
20 Sobic.010G177100 expressed protein -


Gene co-expression network
sample Sobic002G092200 Sobic002G092200 Sobic002G315400 Sobic002G315400 Sobic002G092200--Sobic002G315400 Sobic010G265900 Sobic010G265900 Sobic002G092200--Sobic010G265900 Sobic003G412800 Sobic003G412800 Sobic002G092200--Sobic003G412800 Sobic003G249900 Sobic003G249900 Sobic002G092200--Sobic003G249900 Sobic004G095700 Sobic004G095700 Sobic002G092200--Sobic004G095700 Sobic002G300000 Sobic002G300000 Sobic002G092200--Sobic002G300000 Sobic006G200000 Sobic006G200000 Sobic002G092200--Sobic006G200000 Sobic002G351100 Sobic002G351100 Sobic002G092200--Sobic002G351100 Sobic005G080900 Sobic005G080900 Sobic002G092200--Sobic005G080900 Sobic001G521100 Sobic001G521100 Sobic002G315400--Sobic001G521100 Sobic002G315400--Sobic002G092200 Sobic002G315400--Sobic002G351100 Sobic002G236700 Sobic002G236700 Sobic002G315400--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic002G315400--Sobic009G109300 Sobic002G315400--Sobic003G412800 Sobic003G297200 Sobic003G297200 Sobic002G315400--Sobic003G297200 Sobic002G246900 Sobic002G246900 Sobic002G315400--Sobic002G246900 Sobic007G112100 Sobic007G112100 Sobic002G315400--Sobic007G112100 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic006G102900 Sobic006G102900 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic003G084300 Sobic003G084300 Sobic010G265900--Sobic003G084300 Sobic009G189200 Sobic009G189200 Sobic010G265900--Sobic009G189200 Sobic006G120700 Sobic006G120700 Sobic010G265900--Sobic006G120700 Sobic001G157800 Sobic001G157800 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic003G179500 Sobic003G179500 Sobic003G412800--Sobic003G179500 Sobic010G079100 Sobic010G079100 Sobic003G412800--Sobic010G079100 Sobic003G289800 Sobic003G289800 Sobic003G412800--Sobic003G289800 Sobic010G103700 Sobic010G103700 Sobic003G412800--Sobic010G103700 Sobic001G051300 Sobic001G051300 Sobic003G412800--Sobic001G051300 Sobic009G119700 Sobic009G119700 Sobic003G412800--Sobic009G119700 Sobic010G151700 Sobic010G151700 Sobic003G412800--Sobic010G151700 Sobic002G351700 Sobic002G351700 Sobic003G412800--Sobic002G351700 Sobic003G412800--Sobic009G189200 Sobic003G249900--Sobic005G080900 Sobic004G274900 Sobic004G274900 Sobic003G249900--Sobic004G274900 Sobic006G260300 Sobic006G260300 Sobic003G249900--Sobic006G260300 Sobic010G257100 Sobic010G257100 Sobic003G249900--Sobic010G257100 Sobic008G025600 Sobic008G025600 Sobic003G249900--Sobic008G025600 Sobic003G072300 Sobic003G072300 Sobic003G249900--Sobic003G072300 Sobic003G249900--Sobic002G092200 Sobic001G368800 Sobic001G368800 Sobic003G249900--Sobic001G368800 Sobic006G261900 Sobic006G261900 Sobic003G249900--Sobic006G261900 Sobic004G095700--Sobic002G236700 Sobic004G095700--Sobic006G120700 Sobic004G095700--Sobic002G092200 Sobic004G095700--Sobic009G109300 Sobic004G095700--Sobic002G315400 Sobic004G095700--Sobic001G521100 Sobic004G095700--Sobic009G189200 Sobic004G095700--Sobic002G300000 Sobic003G072900 Sobic003G072900 Sobic004G095700--Sobic003G072900 Sobic002G300000--Sobic002G351100 Sobic002G300000--Sobic002G092200 Sobic001G238900 Sobic001G238900 Sobic002G300000--Sobic001G238900 Sobic004G238700 Sobic004G238700 Sobic002G300000--Sobic004G238700 Sobic003G208800 Sobic003G208800 Sobic002G300000--Sobic003G208800 Sobic003G279100 Sobic003G279100 Sobic002G300000--Sobic003G279100 Sobic006G202150 Sobic006G202150 Sobic002G300000--Sobic006G202150 Sobic002G300000--Sobic004G095700 Sobic006G263400 Sobic006G263400 Sobic002G300000--Sobic006G263400 Sobic006G200000--Sobic006G120700 Sobic006G200000--Sobic005G080900 Sobic003G396600 Sobic003G396600 Sobic006G200000--Sobic003G396600 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic002G351100--Sobic003G297200 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G351100--Sobic002G246900 Sobic002G351100--Sobic001G238900 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.