Gene annotation
Transcriptome id Sobic.001G521100.4,Sobic.001G521100.3,Sobic.001G521100.2,Sobic.001G521100.1
Synonym POLD2, Sb01g048590
Functional annotation POLD2 - Putative DNA polymerase delta complex subunit, expressed
UniProt A0A1Z5SBX9 , C5WZZ1 , A0A1Z5SBS1 , A0A1B6QQS2
Pfam PF04042
Panther DB PTHR10416 PTHR10416:SF0
NCBI CDD KOG2732; DNA polymerase delta, regulatory subunit 55
KEGG Orthology K02328; DNA polymerase delta subunit 2
Gene Ontology GO:0006260; DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G42120 : DNA polymerase delta small subunit
RAP-DB (Rice) LOC_Os03g03650.1 : POLD2 - Putative DNA polymerase delta complex subunit, expressed
MaizeGDB (Corn) Zm00025a000388
Brachypodium KQK23861
Barley HORVU4Hr1G082870.11 , HORVU4Hr1G082870.10 , HORVU4Hr1G082870.13 , HORVU4Hr1G082870.12 , HORVU4Hr1G082870.15 , HORVU4Hr1G082870.14 , HORVU4Hr1G082870.5 , HORVU4Hr1G082870.4 , HORVU4Hr1G082870.7 , HORVU4Hr1G082870.6 , HORVU4Hr1G082870.1 , HORVU4Hr1G082870.3 , HORVU4Hr1G082870.2 , HORVU4Hr1G082870.9 , HORVU4Hr1G082870.8
Wheat TraesCS5A02G490500 , TraesCS4D02G318200 , TraesCS4B02G321500
Populus -


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cDNA sequences
Sobic.001G521100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113400 dnaJ domain containing protein, expressed -
2 Sobic.002G246900 expressed protein -
3 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
4 Sobic.002G315400 expressed protein -
5 Sobic.001G025900 expressed protein -
6 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
7 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
8 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
9 Sobic.003G297200 lipase, putative, expressed -
10 Sobic.001G013400 nuf2 family protein, expressed -
11 Sobic.001G175000 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
12 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
14 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
15 Sobic.006G127200 kelch repeat protein, putative, expressed -
16 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
18 Sobic.004G208100 expressed protein -
19 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
20 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -


Gene co-expression network
sample Sobic001G521100 Sobic001G521100 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic002G246900 Sobic002G246900 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic003G297200 Sobic003G297200 Sobic001G521100--Sobic003G297200 Sobic004G053900 Sobic004G053900 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G290000 Sobic002G290000 Sobic002G113400--Sobic002G290000 Sobic001G013400 Sobic001G013400 Sobic002G113400--Sobic001G013400 Sobic008G148000 Sobic008G148000 Sobic002G113400--Sobic008G148000 Sobic005G110535 Sobic005G110535 Sobic002G113400--Sobic005G110535 Sobic007G125300 Sobic007G125300 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic004G047100 Sobic004G047100 Sobic002G246900--Sobic004G047100 Sobic010G105400 Sobic010G105400 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic002G351100--Sobic003G297200 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic001G440900 Sobic001G440900 Sobic002G351100--Sobic001G440900 Sobic002G351100--Sobic002G246900 Sobic002G351100--Sobic001G238900 Sobic002G315400--Sobic001G521100 Sobic002G092200 Sobic002G092200 Sobic002G315400--Sobic002G092200 Sobic002G315400--Sobic002G351100 Sobic002G315400--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic002G315400--Sobic009G109300 Sobic003G412800 Sobic003G412800 Sobic002G315400--Sobic003G412800 Sobic002G315400--Sobic003G297200 Sobic002G315400--Sobic002G246900 Sobic007G112100 Sobic007G112100 Sobic002G315400--Sobic007G112100 Sobic001G025900--Sobic001G013400 Sobic001G025900--Sobic002G113400 Sobic001G025900--Sobic002G290000 Sobic002G271400 Sobic002G271400 Sobic001G025900--Sobic002G271400 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic001G025900--Sobic004G053900 Sobic004G328300 Sobic004G328300 Sobic001G025900--Sobic004G328300 Sobic001G025900--Sobic006G236800 Sobic006G119300--Sobic002G113400 Sobic001G486600 Sobic001G486600 Sobic006G119300--Sobic001G486600 Sobic006G119300--Sobic002G297500 Sobic006G119300--Sobic007G125300 Sobic010G252200 Sobic010G252200 Sobic006G119300--Sobic010G252200 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic005G210500 Sobic005G210500 Sobic006G119300--Sobic005G210500 Sobic006G119300--Sobic004G053900 Sobic006G236800--Sobic001G025900 Sobic006G236800--Sobic004G328300 Sobic006G236800--Sobic002G113400 Sobic006G236800--Sobic001G300400 Sobic006G236800--Sobic003G297200 Sobic006G236800--Sobic002G271400 Sobic007G084200 Sobic007G084200 Sobic006G236800--Sobic007G084200 Sobic006G236800--Sobic001G521100 Sobic009G138300 Sobic009G138300 Sobic006G236800--Sobic009G138300 Sobic001G401600 Sobic001G401600 Sobic003G442300--Sobic001G401600 Sobic003G442300--Sobic002G246900 Sobic006G218600 Sobic006G218600 Sobic003G442300--Sobic006G218600 Sobic003G442300--Sobic009G181500 Sobic003G442300--Sobic001G521100 Sobic003G442300--Sobic010G051100 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic006G102900 Sobic006G102900 Sobic003G442300--Sobic006G102900 Sobic003G297200--Sobic002G351100 Sobic003G297200--Sobic001G300400 Sobic003G297200--Sobic006G236800 Sobic003G297200--Sobic001G521100 Sobic003G297200--Sobic002G246900 Sobic003G297200--Sobic002G315400 Sobic003G297200--Sobic007G084200 Sobic003G297200--Sobic003G244000 Sobic002G190000 Sobic002G190000 Sobic003G297200--Sobic002G190000
Octagon: transcription factors


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