Gene annotation
Transcriptome id Sobic.001G175000.1,Sobic.001G175000.3,Sobic.001G175000.2
Synonym Sb01g015210
Functional annotation jmjC domain containing protein, expressed
UniProt A0A1Z5S654 , A0A1Z5S647 , C5WT99
Pfam PF10497 PF02373
Panther DB PTHR12549 PTHR12549:SF15
NCBI CDD -
KEGG Orthology K15601; [histone H3]-dimethyl-L-lysine9 demethylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62310 : transcription factor jumonji (jmjC) domain-containing protein
RAP-DB (Rice) LOC_Os03g31594.1 : jmjC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007188 , Zm00025a032720
Brachypodium -
Barley -
Wheat -
Populus PNT38952


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
2 Sobic.002G246900 expressed protein -
3 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
4 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
5 Sobic.002G113400 dnaJ domain containing protein, expressed -
6 Sobic.006G134200 expressed protein -
7 Sobic.004G117300 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
8 Sobic.003G134500 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
9 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
10 Sobic.002G190000 ZOS9-05 - C2H2 zinc finger protein, expressed -
11 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
12 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
13 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
14 Sobic.001G013400 nuf2 family protein, expressed -
15 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
16 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
17 Sobic.002G315400 expressed protein -
18 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
19 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
20 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic001G175000 Sobic001G175000 Sobic006G179200 Sobic006G179200 Sobic001G175000--Sobic006G179200 Sobic002G246900 Sobic002G246900 Sobic001G175000--Sobic002G246900 Sobic001G521100 Sobic001G521100 Sobic001G175000--Sobic001G521100 Sobic010G105400 Sobic010G105400 Sobic001G175000--Sobic010G105400 Sobic002G113400 Sobic002G113400 Sobic001G175000--Sobic002G113400 Sobic006G134200 Sobic006G134200 Sobic001G175000--Sobic006G134200 Sobic004G117300 Sobic004G117300 Sobic001G175000--Sobic004G117300 Sobic003G134500 Sobic003G134500 Sobic001G175000--Sobic003G134500 Sobic004G047100 Sobic004G047100 Sobic001G175000--Sobic004G047100 Sobic004G053900 Sobic004G053900 Sobic006G179200--Sobic004G053900 Sobic006G179200--Sobic010G105400 Sobic008G148000 Sobic008G148000 Sobic006G179200--Sobic008G148000 Sobic006G179200--Sobic002G113400 Sobic006G035600 Sobic006G035600 Sobic006G179200--Sobic006G035600 Sobic001G131300 Sobic001G131300 Sobic006G179200--Sobic001G131300 Sobic001G170800 Sobic001G170800 Sobic006G179200--Sobic001G170800 Sobic007G125300 Sobic007G125300 Sobic006G179200--Sobic007G125300 Sobic005G000500 Sobic005G000500 Sobic006G179200--Sobic005G000500 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic003G297200 Sobic003G297200 Sobic001G521100--Sobic003G297200 Sobic005G144600 Sobic005G144600 Sobic010G105400--Sobic005G144600 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G290000 Sobic002G290000 Sobic002G113400--Sobic002G290000 Sobic001G013400 Sobic001G013400 Sobic002G113400--Sobic001G013400 Sobic002G113400--Sobic008G148000 Sobic005G110535 Sobic005G110535 Sobic002G113400--Sobic005G110535 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic003G328500 Sobic003G328500 Sobic006G134200--Sobic003G328500 Sobic003G387700 Sobic003G387700 Sobic006G134200--Sobic003G387700 Sobic007G207700 Sobic007G207700 Sobic006G134200--Sobic007G207700 Sobic004G257600 Sobic004G257600 Sobic006G134200--Sobic004G257600 Sobic007G100600 Sobic007G100600 Sobic006G134200--Sobic007G100600 Sobic001G075400 Sobic001G075400 Sobic006G134200--Sobic001G075400 Sobic001G177900 Sobic001G177900 Sobic006G134200--Sobic001G177900 Sobic006G134200--Sobic010G105400 Sobic006G134200--Sobic005G144600 Sobic004G117300--Sobic006G134200 Sobic008G129200 Sobic008G129200 Sobic004G117300--Sobic008G129200 Sobic004G117300--Sobic001G175000 Sobic003G041700 Sobic003G041700 Sobic004G117300--Sobic003G041700 Sobic002G279600 Sobic002G279600 Sobic004G117300--Sobic002G279600 Sobic004G117300--Sobic001G075400 Sobic004G117300--Sobic007G207700 Sobic008G113800 Sobic008G113800 Sobic004G117300--Sobic008G113800 Sobic009G194900 Sobic009G194900 Sobic004G117300--Sobic009G194900 Sobic003G134500--Sobic002G246900 Sobic002G372200 Sobic002G372200 Sobic003G134500--Sobic002G372200 Sobic007G196800 Sobic007G196800 Sobic003G134500--Sobic007G196800 Sobic003G134500--Sobic003G442300 Sobic001G401600 Sobic001G401600 Sobic003G134500--Sobic001G401600 Sobic003G134500--Sobic009G181500 Sobic003G134500--Sobic001G175000 Sobic001G300400 Sobic001G300400 Sobic003G134500--Sobic001G300400 Sobic002G426800 Sobic002G426800 Sobic003G134500--Sobic002G426800 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic004G047100--Sobic003G387700
Octagon: transcription factors


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