Gene annotation
Transcriptome id Sobic.003G107200.1
Synonym Sb03g009000, VPS60.1
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5XF33
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF17
NCBI CDD KOG1655; Protein involved in vacuolar protein sorting
KEGG Orthology K12198; CHMP5, charged multivesicular body protein 5
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT3G10640 : SNF7 family protein
RAP-DB (Rice) LOC_Os01g01350.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023850
Brachypodium KQK02771 , KQK08149
Barley HORVU0Hr1G000030.7 , HORVU0Hr1G000030.6 , HORVU0Hr1G000030.5 , HORVU0Hr1G000030.4 , HORVU0Hr1G000030.3 , HORVU0Hr1G000030.2 , HORVU0Hr1G000030.1 , HORVU0Hr1G000030.8 , HORVU3Hr1G014580.1 , HORVU3Hr1G014580.3 , HORVU3Hr1G014580.2 , HORVU3Hr1G014580.5 , HORVU3Hr1G014580.4 , HORVU3Hr1G014580.7 , HORVU3Hr1G014580.6 , HORVU3Hr1G014590.3 , HORVU3Hr1G014590.5 , HORVU3Hr1G014590.2 , HORVU3Hr1G014590.6 , HORVU3Hr1G014590.1 , HORVU0Hr1G000030.13 , HORVU0Hr1G000030.12 , HORVU0Hr1G000030.17 , HORVU0Hr1G000030.16 , HORVU0Hr1G000030.15 , HORVU0Hr1G000030.14 , HORVU0Hr1G000030.11
Wheat TraesCS1B02G008200 , TraesCS1A02G005100 , TraesCS3A02G081400 , TraesCS1B02G006600 , TraesCS1D02G002600 , TraesCS1A02G005900 , TraesCS3B02G096400 , TraesCS3D02G081400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G102900 expressed protein -
2 Sobic.002G246900 expressed protein -
3 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
4 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
5 Sobic.001G261549 - -
6 Sobic.007G154500 F-box protein, putative, expressed -
7 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
8 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
9 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
11 Sobic.002G230800 expressed protein -
12 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
13 Sobic.009G157600 DUF740 domain containing protein, expressed -
14 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
15 Sobic.006G116500 expressed protein -
16 Sobic.001G078700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
17 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
18 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
19 Sobic.004G285900 HMG1/2, putative, expressed -
20 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other


Gene co-expression network
sample Sobic003G107200 Sobic003G107200 Sobic006G102900 Sobic006G102900 Sobic003G107200--Sobic006G102900 Sobic002G246900 Sobic002G246900 Sobic003G107200--Sobic002G246900 Sobic004G047100 Sobic004G047100 Sobic003G107200--Sobic004G047100 Sobic009G181500 Sobic009G181500 Sobic003G107200--Sobic009G181500 Sobic001G261549 Sobic001G261549 Sobic003G107200--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic003G107200--Sobic007G154500 Sobic001G078600 Sobic001G078600 Sobic003G107200--Sobic001G078600 Sobic002G236700 Sobic002G236700 Sobic003G107200--Sobic002G236700 Sobic002G426800 Sobic002G426800 Sobic003G107200--Sobic002G426800 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic006G102900--Sobic004G047100 Sobic009G189200 Sobic009G189200 Sobic006G102900--Sobic009G189200 Sobic002G246900--Sobic004G047100 Sobic010G105400 Sobic010G105400 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic002G246900--Sobic009G181500 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic004G047100--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic003G179500 Sobic003G179500 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic003G387700 Sobic003G387700 Sobic004G047100--Sobic003G387700 Sobic009G181500--Sobic002G426800 Sobic009G181500--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic009G181500--Sobic010G051100 Sobic006G035600 Sobic006G035600 Sobic009G181500--Sobic006G035600 Sobic009G181500--Sobic005G144600 Sobic009G181500--Sobic010G274000 Sobic009G181500--Sobic006G102900 Sobic001G070300 Sobic001G070300 Sobic009G181500--Sobic001G070300 Sobic003G294500 Sobic003G294500 Sobic009G181500--Sobic003G294500 Sobic001G261549--Sobic006G102900 Sobic004G285900 Sobic004G285900 Sobic001G261549--Sobic004G285900 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic009G194900 Sobic009G194900 Sobic001G261549--Sobic009G194900 Sobic001G261549--Sobic003G107200 Sobic001G261549--Sobic001G078600 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic007G154500--Sobic006G102900 Sobic007G154500--Sobic001G078600 Sobic007G154500--Sobic002G426800 Sobic002G146601 Sobic002G146601 Sobic007G154500--Sobic002G146601 Sobic007G154500--Sobic003G107200 Sobic007G154500--Sobic006G116500 Sobic007G154500--Sobic004G047100 Sobic007G154500--Sobic001G261549 Sobic007G154500--Sobic004G285900 Sobic001G078600--Sobic006G102900 Sobic001G078600--Sobic002G426800 Sobic001G078600--Sobic010G274000 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic001G078600--Sobic004G285900 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic001G078600--Sobic007G154500 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic002G236700--Sobic003G107200 Sobic009G109300 Sobic009G109300 Sobic002G236700--Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic002G236700--Sobic010G191000 Sobic002G426800--Sobic009G181500 Sobic002G426800--Sobic001G091500 Sobic002G426800--Sobic005G144600 Sobic002G426800--Sobic004G047100 Sobic003G260700 Sobic003G260700 Sobic002G426800--Sobic003G260700 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic003G444100 Sobic003G444100 Sobic002G426800--Sobic003G444100 Sobic002G426800--Sobic010G105400
Octagon: transcription factors


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