Gene annotation
Transcriptome id Sobic.003G442300.1
Synonym Sb03g047200, AXS2
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5XJC7
Pfam PF03435
Panther DB PTHR10366 PTHR10366:SF348
NCBI CDD KOG1429; dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase
KEGG Orthology K12449; UDP-apiose/xylose synthase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G08200 : UDP-D-apiose/UDP-D-xylose synthase 2
RAP-DB (Rice) LOC_Os01g73790.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a025528 , Zm00025a039057
Brachypodium KQK11727
Barley HORVU1Hr1G020470.11 , HORVU7Hr1G016770.12 , HORVU7Hr1G016770.13 , HORVU7Hr1G016770.10 , HORVU7Hr1G016770.16 , HORVU7Hr1G016770.17 , HORVU7Hr1G016770.14 , HORVU7Hr1G016770.18 , HORVU7Hr1G016770.19 , HORVU7Hr1G016770.8 , HORVU1Hr1G020470.13 , HORVU7Hr1G016770.1 , HORVU7Hr1G016770.2 , HORVU7Hr1G016770.3 , HORVU7Hr1G016770.4 , HORVU1Hr1G020470.10 , HORVU7Hr1G016770.6 , HORVU7Hr1G016770.7 , HORVU1Hr1G020470.14 , HORVU7Hr1G016770.23 , HORVU7Hr1G016770.22 , HORVU7Hr1G016770.20 , HORVU7Hr1G016770.24 , HORVU5Hr1G007360.1 , HORVU1Hr1G082350.4 , HORVU1Hr1G082350.1 , HORVU1Hr1G082350.3 , HORVU1Hr1G082350.2 , HORVU1Hr1G020470.8 , HORVU1Hr1G020470.9 , HORVU1Hr1G020470.1 , HORVU1Hr1G020470.2 , HORVU1Hr1G020470.3 , HORVU1Hr1G020470.4 , HORVU1Hr1G020470.7 , HORVU1Hr1G020470.12 , HORVU4Hr1G058980.1 , HORVU3Hr1G113820.1 , HORVU3Hr1G113820.2 , HORVU3Hr1G113820.3 , HORVU3Hr1G113820.4 , HORVU7Hr1G016770.9 , HORVU7Hr1G016770.5
Wheat TraesCS7B02G228100 , TraesCS7B02G228100 , TraesCS7B02G228100 , TraesCS7B02G228100 , TraesCS3D02G528600 , TraesCS3A02G520600 , TraesCS3B02G590000
Populus -


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cDNA sequences
Sobic.003G442300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G401600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
2 Sobic.002G246900 expressed protein -
3 Sobic.006G218600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBK15 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
5 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
6 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
7 Sobic.001G025900 expressed protein -
8 Sobic.007G176800 acyl carrier protein, putative, expressed -
9 Sobic.006G102900 expressed protein -
10 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
11 Sobic.004G357500 expressed protein -
12 Sobic.001G069700 fatty acid hydroxylase, putative, expressed -
13 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
14 Sobic.001G013400 nuf2 family protein, expressed -
15 Sobic.001G261549 - -
16 Sobic.001G289900 AT hook motif domain containing protein, expressed -
17 Sobic.009G131200 expressed protein -
18 Sobic.001G300400 expansin precursor, putative, expressed -
19 Sobic.003G134500 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
20 Sobic.002G128000 receptor protein kinase, putative, expressed -


Gene co-expression network
sample Sobic003G442300 Sobic003G442300 Sobic001G401600 Sobic001G401600 Sobic003G442300--Sobic001G401600 Sobic002G246900 Sobic002G246900 Sobic003G442300--Sobic002G246900 Sobic006G218600 Sobic006G218600 Sobic003G442300--Sobic006G218600 Sobic009G181500 Sobic009G181500 Sobic003G442300--Sobic009G181500 Sobic001G521100 Sobic001G521100 Sobic003G442300--Sobic001G521100 Sobic010G051100 Sobic010G051100 Sobic003G442300--Sobic010G051100 Sobic001G025900 Sobic001G025900 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic006G102900 Sobic006G102900 Sobic003G442300--Sobic006G102900 Sobic001G401600--Sobic003G442300 Sobic001G401600--Sobic009G181500 Sobic001G401600--Sobic002G246900 Sobic001G401600--Sobic006G102900 Sobic004G047100 Sobic004G047100 Sobic001G401600--Sobic004G047100 Sobic001G401600--Sobic010G051100 Sobic003G444200 Sobic003G444200 Sobic001G401600--Sobic003G444200 Sobic010G105400 Sobic010G105400 Sobic001G401600--Sobic010G105400 Sobic003G410600 Sobic003G410600 Sobic001G401600--Sobic003G410600 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic001G069700 Sobic001G069700 Sobic006G218600--Sobic001G069700 Sobic006G218600--Sobic003G442300 Sobic003G277300 Sobic003G277300 Sobic006G218600--Sobic003G277300 Sobic001G013400 Sobic001G013400 Sobic006G218600--Sobic001G013400 Sobic001G456500 Sobic001G456500 Sobic006G218600--Sobic001G456500 Sobic006G134900 Sobic006G134900 Sobic006G218600--Sobic006G134900 Sobic005G098600 Sobic005G098600 Sobic006G218600--Sobic005G098600 Sobic001G105800 Sobic001G105800 Sobic006G218600--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic006G218600--Sobic001G142000 Sobic002G426800 Sobic002G426800 Sobic009G181500--Sobic002G426800 Sobic009G181500--Sobic004G047100 Sobic009G181500--Sobic010G051100 Sobic006G035600 Sobic006G035600 Sobic009G181500--Sobic006G035600 Sobic005G144600 Sobic005G144600 Sobic009G181500--Sobic005G144600 Sobic010G274000 Sobic010G274000 Sobic009G181500--Sobic010G274000 Sobic009G181500--Sobic006G102900 Sobic001G070300 Sobic001G070300 Sobic009G181500--Sobic001G070300 Sobic003G294500 Sobic003G294500 Sobic009G181500--Sobic003G294500 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic001G521100--Sobic003G442300 Sobic003G297200 Sobic003G297200 Sobic001G521100--Sobic003G297200 Sobic010G051100--Sobic009G181500 Sobic002G191000 Sobic002G191000 Sobic010G051100--Sobic002G191000 Sobic010G051100--Sobic006G035600 Sobic004G053900 Sobic004G053900 Sobic010G051100--Sobic004G053900 Sobic003G118100 Sobic003G118100 Sobic010G051100--Sobic003G118100 Sobic010G051100--Sobic002G113400 Sobic003G179500 Sobic003G179500 Sobic010G051100--Sobic003G179500 Sobic010G051100--Sobic002G246900 Sobic010G051100--Sobic010G191000 Sobic001G025900--Sobic001G013400 Sobic001G025900--Sobic002G113400 Sobic002G290000 Sobic002G290000 Sobic001G025900--Sobic002G290000 Sobic002G271400 Sobic002G271400 Sobic001G025900--Sobic002G271400 Sobic005G110535 Sobic005G110535 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic001G025900--Sobic004G053900 Sobic004G328300 Sobic004G328300 Sobic001G025900--Sobic004G328300 Sobic001G025900--Sobic006G236800 Sobic007G176800--Sobic006G134900 Sobic007G176800--Sobic003G442300 Sobic001G261549 Sobic001G261549 Sobic007G176800--Sobic001G261549 Sobic009G189200 Sobic009G189200 Sobic007G176800--Sobic009G189200 Sobic007G214700 Sobic007G214700 Sobic007G176800--Sobic007G214700 Sobic010G230000 Sobic010G230000 Sobic007G176800--Sobic010G230000 Sobic004G355500 Sobic004G355500 Sobic007G176800--Sobic004G355500 Sobic005G047000 Sobic005G047000 Sobic007G176800--Sobic005G047000 Sobic007G176800--Sobic001G169800 Sobic001G078600 Sobic001G078600 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic006G102900--Sobic010G274000 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200
Octagon: transcription factors


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