Gene annotation
Transcriptome id Sobic.006G218600.1
Synonym Sb06g028820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBK15 - F-box domain and kelch repeat containing protein, expressed
UniProt A0A1Z5RF71
Pfam PF01344
Panther DB PTHR24413 PTHR24413:SF123
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G60570 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os04g52830.2 : OsFBK15 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a057047 , Zm00025a037048 , Zm00025a009746 , Zm00025a046175
Brachypodium KQJ84641 , KQJ84642
Barley HORVU2Hr1G103880.6 , HORVU2Hr1G103880.7 , HORVU2Hr1G103880.4 , HORVU2Hr1G103880.5 , HORVU2Hr1G103880.2 , HORVU2Hr1G103880.3 , HORVU2Hr1G103880.1 , HORVU2Hr1G103880.8 , HORVU2Hr1G103880.9 , HORVU2Hr1G103880.10
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069700 fatty acid hydroxylase, putative, expressed -
2 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
3 Sobic.003G277300 Up-reguralion under heat(PubMedID : 24916767)@expressed protein -
4 Sobic.001G013400 nuf2 family protein, expressed -
5 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
6 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
7 Sobic.005G098600 - -
8 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
9 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
10 Sobic.002G128000 receptor protein kinase, putative, expressed -
11 Sobic.001G025900 expressed protein -
12 Sobic.002G372200 hydrolase protein, putative, expressed -
13 Sobic.007G176800 acyl carrier protein, putative, expressed -
14 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
15 Sobic.004G327600 expressed protein -
16 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
17 Sobic.010G156100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
19 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
20 Sobic.006G093200 PHD finger protein, putative, expressed -


Gene co-expression network
sample Sobic006G218600 Sobic006G218600 Sobic001G069700 Sobic001G069700 Sobic006G218600--Sobic001G069700 Sobic003G442300 Sobic003G442300 Sobic006G218600--Sobic003G442300 Sobic003G277300 Sobic003G277300 Sobic006G218600--Sobic003G277300 Sobic001G013400 Sobic001G013400 Sobic006G218600--Sobic001G013400 Sobic001G456500 Sobic001G456500 Sobic006G218600--Sobic001G456500 Sobic006G134900 Sobic006G134900 Sobic006G218600--Sobic006G134900 Sobic005G098600 Sobic005G098600 Sobic006G218600--Sobic005G098600 Sobic001G105800 Sobic001G105800 Sobic006G218600--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic006G218600--Sobic001G142000 Sobic001G069700--Sobic006G218600 Sobic009G131200 Sobic009G131200 Sobic001G069700--Sobic009G131200 Sobic001G069700--Sobic003G442300 Sobic003G336900 Sobic003G336900 Sobic001G069700--Sobic003G336900 Sobic008G004900 Sobic008G004900 Sobic001G069700--Sobic008G004900 Sobic004G063600 Sobic004G063600 Sobic001G069700--Sobic004G063600 Sobic002G322700 Sobic002G322700 Sobic001G069700--Sobic002G322700 Sobic007G196800 Sobic007G196800 Sobic001G069700--Sobic007G196800 Sobic009G136000 Sobic009G136000 Sobic001G069700--Sobic009G136000 Sobic001G401600 Sobic001G401600 Sobic003G442300--Sobic001G401600 Sobic002G246900 Sobic002G246900 Sobic003G442300--Sobic002G246900 Sobic003G442300--Sobic006G218600 Sobic009G181500 Sobic009G181500 Sobic003G442300--Sobic009G181500 Sobic001G521100 Sobic001G521100 Sobic003G442300--Sobic001G521100 Sobic010G051100 Sobic010G051100 Sobic003G442300--Sobic010G051100 Sobic001G025900 Sobic001G025900 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic006G102900 Sobic006G102900 Sobic003G442300--Sobic006G102900 Sobic003G277300--Sobic006G218600 Sobic004G197400 Sobic004G197400 Sobic003G277300--Sobic004G197400 Sobic003G135400 Sobic003G135400 Sobic003G277300--Sobic003G135400 Sobic001G103000 Sobic001G103000 Sobic003G277300--Sobic001G103000 Sobic003G277300--Sobic003G442300 Sobic007G154500 Sobic007G154500 Sobic003G277300--Sobic007G154500 Sobic003G201000 Sobic003G201000 Sobic003G277300--Sobic003G201000 Sobic009G189200 Sobic009G189200 Sobic003G277300--Sobic009G189200 Sobic004G355500 Sobic004G355500 Sobic003G277300--Sobic004G355500 Sobic001G013400--Sobic001G025900 Sobic007G007800 Sobic007G007800 Sobic001G013400--Sobic007G007800 Sobic002G290000 Sobic002G290000 Sobic001G013400--Sobic002G290000 Sobic002G113400 Sobic002G113400 Sobic001G013400--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic001G013400--Sobic008G129200 Sobic001G013400--Sobic001G142000 Sobic005G110535 Sobic005G110535 Sobic001G013400--Sobic005G110535 Sobic001G083300 Sobic001G083300 Sobic001G013400--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic001G013400--Sobic004G331600 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic001G456500--Sobic004G355500 Sobic006G081800 Sobic006G081800 Sobic006G134900--Sobic006G081800 Sobic006G134900--Sobic001G169800 Sobic006G134900--Sobic007G176800 Sobic004G170500 Sobic004G170500 Sobic006G134900--Sobic004G170500 Sobic006G189200 Sobic006G189200 Sobic006G134900--Sobic006G189200 Sobic006G134900--Sobic006G116500 Sobic006G134900--Sobic001G142000 Sobic001G078600 Sobic001G078600 Sobic006G134900--Sobic001G078600 Sobic006G134900--Sobic001G105800 Sobic005G098600--Sobic001G142000 Sobic005G098600--Sobic001G456500 Sobic005G098600--Sobic006G218600 Sobic005G098600--Sobic003G444300 Sobic004G327600 Sobic004G327600 Sobic005G098600--Sobic004G327600 Sobic010G003100 Sobic010G003100 Sobic005G098600--Sobic010G003100 Sobic004G257600 Sobic004G257600 Sobic005G098600--Sobic004G257600 Sobic005G098600--Sobic001G105800 Sobic004G075900 Sobic004G075900 Sobic005G098600--Sobic004G075900 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic010G105400 Sobic010G105400 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic001G142000--Sobic001G456500 Sobic010G054600 Sobic010G054600 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G142000--Sobic001G013400 Sobic001G142000--Sobic004G075900
Octagon: transcription factors


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