Gene annotation
Transcriptome id Sobic.006G093200.1
Synonym AL3, Sb06g017810
Functional annotation PHD finger protein, putative, expressed
UniProt A0A1B6PL44
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF54
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G42790 : alfin-like 3
RAP-DB (Rice) LOC_Os02g35600.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a056134
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.008G070700 leafbladeless1, putative, expressed -
4 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
5 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
6 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
7 Sobic.010G269700 expressed protein -
8 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
9 Sobic.010G222800 expressed protein -
10 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
11 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
12 Sobic.001G522300 leucine-rich repeat transmembrane protein kinase, putative, expressed -
13 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
14 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
15 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
16 Sobic.006G142500 protein kinase, putative, expressed -
17 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
18 Sobic.009G099150 - -
19 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -
20 Sobic.001G493900 beta-galactosidase, putative, expressed -


Gene co-expression network
sample Sobic006G093200 Sobic006G093200 Sobic003G019900 Sobic003G019900 Sobic006G093200--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic006G093200--Sobic010G092400 Sobic008G070700 Sobic008G070700 Sobic006G093200--Sobic008G070700 Sobic010G024000 Sobic010G024000 Sobic006G093200--Sobic010G024000 Sobic006G274200 Sobic006G274200 Sobic006G093200--Sobic006G274200 Sobic003G032200 Sobic003G032200 Sobic006G093200--Sobic003G032200 Sobic010G269700 Sobic010G269700 Sobic006G093200--Sobic010G269700 Sobic001G074000 Sobic001G074000 Sobic006G093200--Sobic001G074000 Sobic010G222800 Sobic010G222800 Sobic006G093200--Sobic010G222800 Sobic003G019900--Sobic006G274200 Sobic001G493900 Sobic001G493900 Sobic003G019900--Sobic001G493900 Sobic003G338700 Sobic003G338700 Sobic003G019900--Sobic003G338700 Sobic008G151600 Sobic008G151600 Sobic003G019900--Sobic008G151600 Sobic007G147200 Sobic007G147200 Sobic003G019900--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic003G019900--Sobic010G014500 Sobic006G163300 Sobic006G163300 Sobic003G019900--Sobic006G163300 Sobic003G019900--Sobic001G074000 Sobic004G267600 Sobic004G267600 Sobic003G019900--Sobic004G267600 Sobic007G116800 Sobic007G116800 Sobic010G092400--Sobic007G116800 Sobic005G062600 Sobic005G062600 Sobic010G092400--Sobic005G062600 Sobic003G085900 Sobic003G085900 Sobic010G092400--Sobic003G085900 Sobic007G007800 Sobic007G007800 Sobic010G092400--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic010G092400--Sobic009G184200 Sobic010G092400--Sobic010G269700 Sobic007G087800 Sobic007G087800 Sobic010G092400--Sobic007G087800 Sobic003G387700 Sobic003G387700 Sobic010G092400--Sobic003G387700 Sobic010G092400--Sobic008G070700 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic008G070700--Sobic002G112000 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic008G070700--Sobic010G222800 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic010G024000--Sobic010G222800 Sobic008G131900 Sobic008G131900 Sobic010G024000--Sobic008G131900 Sobic007G076200 Sobic007G076200 Sobic010G024000--Sobic007G076200 Sobic003G411700 Sobic003G411700 Sobic010G024000--Sobic003G411700 Sobic002G271400 Sobic002G271400 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic006G193100 Sobic006G193100 Sobic010G024000--Sobic006G193100 Sobic003G343200 Sobic003G343200 Sobic010G024000--Sobic003G343200 Sobic002G052800 Sobic002G052800 Sobic010G024000--Sobic002G052800 Sobic006G274200--Sobic003G019900 Sobic006G274200--Sobic010G269700 Sobic003G002000 Sobic003G002000 Sobic006G274200--Sobic003G002000 Sobic007G209200 Sobic007G209200 Sobic006G274200--Sobic007G209200 Sobic001G101900 Sobic001G101900 Sobic006G274200--Sobic001G101900 Sobic006G274200--Sobic008G151600 Sobic009G146700 Sobic009G146700 Sobic006G274200--Sobic009G146700 Sobic006G274200--Sobic003G338700 Sobic006G274200--Sobic001G493900 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic010G105400 Sobic010G105400 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400 Sobic010G269700--Sobic006G274200 Sobic010G269700--Sobic003G019900 Sobic002G222500 Sobic002G222500 Sobic010G269700--Sobic002G222500 Sobic003G373900 Sobic003G373900 Sobic010G269700--Sobic003G373900 Sobic010G269700--Sobic010G092400 Sobic010G269700--Sobic010G086000 Sobic010G269700--Sobic003G002000 Sobic005G020100 Sobic005G020100 Sobic010G269700--Sobic005G020100 Sobic010G269700--Sobic010G241100 Sobic001G522300 Sobic001G522300 Sobic001G074000--Sobic001G522300 Sobic003G070600 Sobic003G070600 Sobic001G074000--Sobic003G070600 Sobic009G129700 Sobic009G129700 Sobic001G074000--Sobic009G129700 Sobic007G160300 Sobic007G160300 Sobic001G074000--Sobic007G160300 Sobic001G199400 Sobic001G199400 Sobic001G074000--Sobic001G199400 Sobic001G074000--Sobic001G493900 Sobic001G074000--Sobic003G019900 Sobic010G014700 Sobic010G014700 Sobic001G074000--Sobic010G014700 Sobic010G020600 Sobic010G020600 Sobic001G074000--Sobic010G020600 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900
Octagon: transcription factors


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