Gene annotation
Transcriptome id Sobic.001G401600.1
Synonym XXT2, ATXT2, Sb01g038000, XT2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyltransferase, putative, expressed
UniProt C5WNE6
Pfam PF05637
Panther DB PTHR31311 PTHR31311:SF5
NCBI CDD KOG4748; Subunit of Golgi mannosyltransferase complex
KEGG Orthology K08238; xyloglucan 6-xylosyltransferase
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G62720 : xylosyltransferase 1
RAP-DB (Rice) LOC_Os03g18820.1 : glycosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a037121 , Zm00025a056700 , Zm00025a056502 , Zm00025a052615 , Zm00025a002061 , Zm00025a033091
Brachypodium PNT77555 , KQK22069
Barley HORVU4Hr1G054910.1 , HORVU4Hr1G054910.2
Wheat TraesCS4A02G116100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G401600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G442300 NAD dependent epimerase/dehydratase family protein, putative, expressed K12449: UDP-apiose/xylose synthase
2 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
3 Sobic.002G246900 expressed protein -
4 Sobic.006G102900 expressed protein -
5 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
6 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
7 Sobic.003G444200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
8 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
9 Sobic.003G410600 exostosin family domain containing protein, expressed -
10 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
11 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
12 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
13 Sobic.001G289900 AT hook motif domain containing protein, expressed -
14 Sobic.006G116500 expressed protein -
15 Sobic.010G191000 expressed protein -
16 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
17 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.001G025900 expressed protein -
19 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
20 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -


Gene co-expression network
sample Sobic001G401600 Sobic001G401600 Sobic003G442300 Sobic003G442300 Sobic001G401600--Sobic003G442300 Sobic009G181500 Sobic009G181500 Sobic001G401600--Sobic009G181500 Sobic002G246900 Sobic002G246900 Sobic001G401600--Sobic002G246900 Sobic006G102900 Sobic006G102900 Sobic001G401600--Sobic006G102900 Sobic004G047100 Sobic004G047100 Sobic001G401600--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic001G401600--Sobic010G051100 Sobic003G444200 Sobic003G444200 Sobic001G401600--Sobic003G444200 Sobic010G105400 Sobic010G105400 Sobic001G401600--Sobic010G105400 Sobic003G410600 Sobic003G410600 Sobic001G401600--Sobic003G410600 Sobic003G442300--Sobic001G401600 Sobic003G442300--Sobic002G246900 Sobic006G218600 Sobic006G218600 Sobic003G442300--Sobic006G218600 Sobic003G442300--Sobic009G181500 Sobic001G521100 Sobic001G521100 Sobic003G442300--Sobic001G521100 Sobic003G442300--Sobic010G051100 Sobic001G025900 Sobic001G025900 Sobic003G442300--Sobic001G025900 Sobic007G176800 Sobic007G176800 Sobic003G442300--Sobic007G176800 Sobic003G442300--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic009G181500--Sobic002G426800 Sobic009G181500--Sobic004G047100 Sobic009G181500--Sobic010G051100 Sobic006G035600 Sobic006G035600 Sobic009G181500--Sobic006G035600 Sobic005G144600 Sobic005G144600 Sobic009G181500--Sobic005G144600 Sobic010G274000 Sobic010G274000 Sobic009G181500--Sobic010G274000 Sobic009G181500--Sobic006G102900 Sobic001G070300 Sobic001G070300 Sobic009G181500--Sobic001G070300 Sobic003G294500 Sobic003G294500 Sobic009G181500--Sobic003G294500 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic001G078600 Sobic001G078600 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic006G102900--Sobic009G181500 Sobic001G261549 Sobic001G261549 Sobic006G102900--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic006G102900--Sobic010G274000 Sobic006G102900--Sobic004G047100 Sobic009G189200 Sobic009G189200 Sobic006G102900--Sobic009G189200 Sobic004G047100--Sobic010G105400 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic003G179500 Sobic003G179500 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic003G387700 Sobic003G387700 Sobic004G047100--Sobic003G387700 Sobic010G051100--Sobic009G181500 Sobic002G191000 Sobic002G191000 Sobic010G051100--Sobic002G191000 Sobic010G051100--Sobic006G035600 Sobic004G053900 Sobic004G053900 Sobic010G051100--Sobic004G053900 Sobic003G118100 Sobic003G118100 Sobic010G051100--Sobic003G118100 Sobic002G113400 Sobic002G113400 Sobic010G051100--Sobic002G113400 Sobic010G051100--Sobic003G179500 Sobic010G051100--Sobic002G246900 Sobic010G051100--Sobic010G191000 Sobic003G444200--Sobic006G102900 Sobic003G444200--Sobic001G401600 Sobic003G444200--Sobic009G189200 Sobic010G101600 Sobic010G101600 Sobic003G444200--Sobic010G101600 Sobic010G089500 Sobic010G089500 Sobic003G444200--Sobic010G089500 Sobic002G232400 Sobic002G232400 Sobic003G444200--Sobic002G232400 Sobic002G271300 Sobic002G271300 Sobic003G444200--Sobic002G271300 Sobic008G084100 Sobic008G084100 Sobic003G444200--Sobic008G084100 Sobic002G111500 Sobic002G111500 Sobic003G444200--Sobic002G111500 Sobic010G105400--Sobic005G144600 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic010G105400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic010G105400--Sobic001G398400 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic007G168900 Sobic007G168900 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic003G410600--Sobic003G294500 Sobic003G013000 Sobic003G013000 Sobic003G410600--Sobic003G013000 Sobic003G410600--Sobic005G144600 Sobic001G177900 Sobic001G177900 Sobic003G410600--Sobic001G177900 Sobic003G135400 Sobic003G135400 Sobic003G410600--Sobic003G135400 Sobic003G314900 Sobic003G314900 Sobic003G410600--Sobic003G314900 Sobic003G410600--Sobic007G168900 Sobic010G008900 Sobic010G008900 Sobic003G410600--Sobic010G008900 Sobic001G029800 Sobic001G029800 Sobic003G410600--Sobic001G029800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.