Gene annotation
Transcriptome id Sobic.002G162300.2
Synonym Sb02g020730
Functional annotation expressed protein
UniProt A0A1W0W4G2
Pfam PF09696
Panther DB PTHR28605
NCBI CDD KOG4487; Uncharacterized conserved protein
KEGG Orthology K11270; chromosome transmission fidelity protein 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52220 : -
RAP-DB (Rice) LOC_Os09g12780.1 : expressed protein
MaizeGDB (Corn) Zm00025a046371
Brachypodium KQJ89773 , KQJ89771
Barley HORVU5Hr1G054380.1 , HORVU5Hr1G054480.2 , HORVU5Hr1G054480.3 , HORVU5Hr1G054480.1
Wheat TraesCS5A02G178700 , TraesCS5A02G178700 , TraesCS5B02G176400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
2 Sobic.004G285900 HMG1/2, putative, expressed -
3 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
4 Sobic.006G102900 expressed protein -
5 Sobic.006G138900 expressed protein -
6 Sobic.009G120700 microtubule-binding protein TANGLED1, putative, expressed K18636: microtubule-binding protein TANGLED1
7 Sobic.001G261549 - -
8 Sobic.001G401600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
9 Sobic.004G279601 - K11254: histone H4
10 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
11 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
12 Sobic.007G214700 fasciclin domain containing protein, expressed -
13 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
14 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
15 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
16 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
17 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
18 Sobic.001G528600 remorin family protein, putative, expressed -
19 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
20 Sobic.006G116500 expressed protein -


Gene co-expression network
sample Sobic002G162300 Sobic002G162300 Sobic001G078600 Sobic001G078600 Sobic002G162300--Sobic001G078600 Sobic004G285900 Sobic004G285900 Sobic002G162300--Sobic004G285900 Sobic006G081800 Sobic006G081800 Sobic002G162300--Sobic006G081800 Sobic006G102900 Sobic006G102900 Sobic002G162300--Sobic006G102900 Sobic006G138900 Sobic006G138900 Sobic002G162300--Sobic006G138900 Sobic009G120700 Sobic009G120700 Sobic002G162300--Sobic009G120700 Sobic001G261549 Sobic001G261549 Sobic002G162300--Sobic001G261549 Sobic001G401600 Sobic001G401600 Sobic002G162300--Sobic001G401600 Sobic004G279601 Sobic004G279601 Sobic002G162300--Sobic004G279601 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic001G078600--Sobic010G274000 Sobic005G144600 Sobic005G144600 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic001G078600--Sobic004G285900 Sobic006G116500 Sobic006G116500 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic007G154500 Sobic007G154500 Sobic001G078600--Sobic007G154500 Sobic004G285900--Sobic001G078600 Sobic004G285900--Sobic001G261549 Sobic004G285900--Sobic004G279601 Sobic007G214700 Sobic007G214700 Sobic004G285900--Sobic007G214700 Sobic004G285900--Sobic006G102900 Sobic004G285900--Sobic002G162300 Sobic004G285900--Sobic007G154500 Sobic009G189200 Sobic009G189200 Sobic004G285900--Sobic009G189200 Sobic001G205000 Sobic001G205000 Sobic004G285900--Sobic001G205000 Sobic006G134900 Sobic006G134900 Sobic006G081800--Sobic006G134900 Sobic004G229200 Sobic004G229200 Sobic006G081800--Sobic004G229200 Sobic001G169800 Sobic001G169800 Sobic006G081800--Sobic001G169800 Sobic001G105800 Sobic001G105800 Sobic006G081800--Sobic001G105800 Sobic007G017700 Sobic007G017700 Sobic006G081800--Sobic007G017700 Sobic002G289800 Sobic002G289800 Sobic006G081800--Sobic002G289800 Sobic001G238900 Sobic001G238900 Sobic006G081800--Sobic001G238900 Sobic002G246900 Sobic002G246900 Sobic006G081800--Sobic002G246900 Sobic006G081800--Sobic004G279601 Sobic006G102900--Sobic001G078600 Sobic003G107200 Sobic003G107200 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200 Sobic010G227200 Sobic010G227200 Sobic006G138900--Sobic010G227200 Sobic003G387700 Sobic003G387700 Sobic006G138900--Sobic003G387700 Sobic009G157600 Sobic009G157600 Sobic006G138900--Sobic009G157600 Sobic006G138900--Sobic002G162300 Sobic006G138900--Sobic009G120700 Sobic001G091500 Sobic001G091500 Sobic006G138900--Sobic001G091500 Sobic006G134200 Sobic006G134200 Sobic006G138900--Sobic006G134200 Sobic006G138900--Sobic002G426800 Sobic003G328500 Sobic003G328500 Sobic006G138900--Sobic003G328500 Sobic009G120700--Sobic001G091500 Sobic010G119300 Sobic010G119300 Sobic009G120700--Sobic010G119300 Sobic003G102000 Sobic003G102000 Sobic009G120700--Sobic003G102000 Sobic009G120700--Sobic003G328500 Sobic009G120700--Sobic003G387700 Sobic009G120700--Sobic002G426800 Sobic007G100600 Sobic007G100600 Sobic009G120700--Sobic007G100600 Sobic001G230300 Sobic001G230300 Sobic009G120700--Sobic001G230300 Sobic007G132900 Sobic007G132900 Sobic009G120700--Sobic007G132900 Sobic001G261549--Sobic006G102900 Sobic001G261549--Sobic004G285900 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic009G194900 Sobic009G194900 Sobic001G261549--Sobic009G194900 Sobic001G261549--Sobic003G107200 Sobic001G261549--Sobic001G078600 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic003G442300 Sobic003G442300 Sobic001G401600--Sobic003G442300 Sobic001G401600--Sobic009G181500 Sobic001G401600--Sobic002G246900 Sobic001G401600--Sobic006G102900 Sobic001G401600--Sobic004G047100 Sobic010G051100 Sobic010G051100 Sobic001G401600--Sobic010G051100 Sobic003G444200 Sobic003G444200 Sobic001G401600--Sobic003G444200 Sobic010G105400 Sobic010G105400 Sobic001G401600--Sobic010G105400 Sobic003G410600 Sobic003G410600 Sobic001G401600--Sobic003G410600 Sobic004G279601--Sobic001G205000 Sobic006G076400 Sobic006G076400 Sobic004G279601--Sobic006G076400 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic004G279601--Sobic001G261549
Octagon: transcription factors


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