Gene annotation
Transcriptome id Sobic.004G095700.2,Sobic.004G095700.3
Synonym ATCS-C, Sb04g007900, OASC
Functional annotation cysteine synthase, putative, expressed
UniProt C5XYF6
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF107
NCBI CDD KOG1252; Cystathionine beta-synthase and related enzymes
KEGG Orthology K01738; cysteine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43750 : O-acetylserine (thiol) lyase B
RAP-DB (Rice) LOC_Os02g12900.1 : cysteine synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ94076 , KQJ94077 , KQJ94075 , PNT66193
Barley HORVU6Hr1G063480.3 , HORVU6Hr1G063480.2 , HORVU6Hr1G063480.1 , HORVU6Hr1G040130.61 , HORVU6Hr1G040130.60 , HORVU6Hr1G063480.12 , HORVU6Hr1G063480.11 , HORVU6Hr1G063480.10 , HORVU6Hr1G063480.7 , HORVU6Hr1G063480.6 , HORVU6Hr1G063480.5 , HORVU6Hr1G063480.4 , HORVU6Hr1G063480.9 , HORVU6Hr1G063480.8 , HORVU6Hr1G040130.59
Wheat TraesCS6A02G187300 , TraesCS6A02G187300 , TraesCS6B02G217200 , TraesCS6B02G217200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
2 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
3 Sobic.002G092200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
4 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
5 Sobic.002G315400 expressed protein -
6 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
7 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
8 Sobic.002G300000 expansin precursor, putative, expressed -
9 Sobic.003G072900 OsRhmbd18 - Putative Rhomboid homologue, expressed -
10 Sobic.002G246900 expressed protein -
11 Sobic.006G200000 RNA recognition motif, putative, expressed -
12 Sobic.004G208100 expressed protein -
13 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.003G074900 expressed protein -
15 Sobic.002G304400 expressed protein -
16 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
17 Sobic.001G068700 reticulon domain containing protein, putative, expressed -
18 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
19 Sobic.002G158500 ankyrin, putative, expressed -
20 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13


Gene co-expression network
sample Sobic004G095700 Sobic004G095700 Sobic002G236700 Sobic002G236700 Sobic004G095700--Sobic002G236700 Sobic006G120700 Sobic006G120700 Sobic004G095700--Sobic006G120700 Sobic002G092200 Sobic002G092200 Sobic004G095700--Sobic002G092200 Sobic009G109300 Sobic009G109300 Sobic004G095700--Sobic009G109300 Sobic002G315400 Sobic002G315400 Sobic004G095700--Sobic002G315400 Sobic001G521100 Sobic001G521100 Sobic004G095700--Sobic001G521100 Sobic009G189200 Sobic009G189200 Sobic004G095700--Sobic009G189200 Sobic002G300000 Sobic002G300000 Sobic004G095700--Sobic002G300000 Sobic003G072900 Sobic003G072900 Sobic004G095700--Sobic003G072900 Sobic002G246900 Sobic002G246900 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic002G236700--Sobic007G112100 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic006G200000 Sobic006G200000 Sobic006G120700--Sobic006G200000 Sobic001G068700 Sobic001G068700 Sobic006G120700--Sobic001G068700 Sobic002G101000 Sobic002G101000 Sobic006G120700--Sobic002G101000 Sobic003G396600 Sobic003G396600 Sobic006G120700--Sobic003G396600 Sobic010G144900 Sobic010G144900 Sobic006G120700--Sobic010G144900 Sobic010G265900 Sobic010G265900 Sobic006G120700--Sobic010G265900 Sobic006G120700--Sobic002G236700 Sobic007G044400 Sobic007G044400 Sobic006G120700--Sobic007G044400 Sobic006G102900 Sobic006G102900 Sobic006G120700--Sobic006G102900 Sobic002G092200--Sobic002G315400 Sobic002G092200--Sobic010G265900 Sobic003G412800 Sobic003G412800 Sobic002G092200--Sobic003G412800 Sobic003G249900 Sobic003G249900 Sobic002G092200--Sobic003G249900 Sobic002G092200--Sobic004G095700 Sobic002G092200--Sobic002G300000 Sobic002G092200--Sobic006G200000 Sobic002G351100 Sobic002G351100 Sobic002G092200--Sobic002G351100 Sobic005G080900 Sobic005G080900 Sobic002G092200--Sobic005G080900 Sobic009G109300--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic009G109300--Sobic006G051000 Sobic010G103700 Sobic010G103700 Sobic009G109300--Sobic010G103700 Sobic006G195500 Sobic006G195500 Sobic009G109300--Sobic006G195500 Sobic001G238900 Sobic001G238900 Sobic009G109300--Sobic001G238900 Sobic002G230800 Sobic002G230800 Sobic009G109300--Sobic002G230800 Sobic003G183700 Sobic003G183700 Sobic009G109300--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic009G109300--Sobic003G179500 Sobic009G109300--Sobic002G246900 Sobic002G315400--Sobic001G521100 Sobic002G315400--Sobic002G092200 Sobic002G315400--Sobic002G351100 Sobic002G315400--Sobic002G236700 Sobic002G315400--Sobic009G109300 Sobic002G315400--Sobic003G412800 Sobic003G297200 Sobic003G297200 Sobic002G315400--Sobic003G297200 Sobic002G315400--Sobic002G246900 Sobic002G315400--Sobic007G112100 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic001G521100--Sobic002G351100 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic006G119300 Sobic006G119300 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic001G521100--Sobic003G297200 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic009G189200--Sobic010G144900 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic002G300000--Sobic002G351100 Sobic002G300000--Sobic002G092200 Sobic002G300000--Sobic001G238900 Sobic004G238700 Sobic004G238700 Sobic002G300000--Sobic004G238700 Sobic003G208800 Sobic003G208800 Sobic002G300000--Sobic003G208800 Sobic003G279100 Sobic003G279100 Sobic002G300000--Sobic003G279100 Sobic006G202150 Sobic006G202150 Sobic002G300000--Sobic006G202150 Sobic002G300000--Sobic004G095700 Sobic006G263400 Sobic006G263400 Sobic002G300000--Sobic006G263400 Sobic003G072900--Sobic009G189200 Sobic003G072900--Sobic002G236700 Sobic003G072900--Sobic010G144900 Sobic001G336050 Sobic001G336050 Sobic003G072900--Sobic001G336050 Sobic003G072900--Sobic006G120700 Sobic003G072900--Sobic003G122200 Sobic003G072900--Sobic003G396600 Sobic003G072900--Sobic003G084300 Sobic009G111400 Sobic009G111400 Sobic003G072900--Sobic009G111400
Octagon: transcription factors


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