Gene annotation
Transcriptome id Sobic.003G072900.1
Synonym ATRBL1, Sb03g006170, RBL1
Functional annotation OsRhmbd18 - Putative Rhomboid homologue, expressed
UniProt C5XQ04
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF25
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT2G29050 : RHOMBOID-like 1
RAP-DB (Rice) LOC_Os11g47840.1 : OsRhmbd18 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a023475
Brachypodium KQK02692
Barley -
Wheat TraesCS3A02G071500 , TraesCS3D02G070700 , TraesCS3B02G085300
Populus -


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cDNA sequences
Sobic.003G072900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
2 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
3 Sobic.010G144900 fiber protein Fb34, putative, expressed -
4 Sobic.001G336050 - K18635: protein SPIRAL1 and related proteins
5 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
6 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
8 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
9 Sobic.009G111400 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
10 Sobic.008G141200 DUF1336 domain containing protein, expressed -
11 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
12 Sobic.002G333800 CSLF8 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed K00770: 1,4-beta-D-xylan synthase
13 Sobic.006G200000 RNA recognition motif, putative, expressed -
14 Sobic.006G102900 expressed protein -
15 Sobic.003G364900 hemerythrin family protein, expressed -
16 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
17 Sobic.008G027700 RALFL23 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
18 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
19 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
20 Sobic.001G352500 expressed protein -


Gene co-expression network
sample Sobic003G072900 Sobic003G072900 Sobic009G189200 Sobic009G189200 Sobic003G072900--Sobic009G189200 Sobic002G236700 Sobic002G236700 Sobic003G072900--Sobic002G236700 Sobic010G144900 Sobic010G144900 Sobic003G072900--Sobic010G144900 Sobic001G336050 Sobic001G336050 Sobic003G072900--Sobic001G336050 Sobic006G120700 Sobic006G120700 Sobic003G072900--Sobic006G120700 Sobic003G122200 Sobic003G122200 Sobic003G072900--Sobic003G122200 Sobic003G396600 Sobic003G396600 Sobic003G072900--Sobic003G396600 Sobic003G084300 Sobic003G084300 Sobic003G072900--Sobic003G084300 Sobic009G111400 Sobic009G111400 Sobic003G072900--Sobic009G111400 Sobic006G102900 Sobic006G102900 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic009G189200--Sobic010G144900 Sobic007G044400 Sobic007G044400 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic009G189200--Sobic003G084300 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic002G246900 Sobic002G246900 Sobic002G236700--Sobic002G246900 Sobic001G140700 Sobic001G140700 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic009G109300 Sobic009G109300 Sobic002G236700--Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic010G144900--Sobic007G044400 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic001G154400 Sobic001G154400 Sobic001G336050--Sobic001G154400 Sobic001G517600 Sobic001G517600 Sobic001G336050--Sobic001G517600 Sobic006G108600 Sobic006G108600 Sobic001G336050--Sobic006G108600 Sobic004G032000 Sobic004G032000 Sobic001G336050--Sobic004G032000 Sobic003G289601 Sobic003G289601 Sobic001G336050--Sobic003G289601 Sobic002G304400 Sobic002G304400 Sobic001G336050--Sobic002G304400 Sobic007G134800 Sobic007G134800 Sobic001G336050--Sobic007G134800 Sobic001G336050--Sobic003G072900 Sobic003G300900 Sobic003G300900 Sobic001G336050--Sobic003G300900 Sobic006G200000 Sobic006G200000 Sobic006G120700--Sobic006G200000 Sobic001G068700 Sobic001G068700 Sobic006G120700--Sobic001G068700 Sobic002G101000 Sobic002G101000 Sobic006G120700--Sobic002G101000 Sobic006G120700--Sobic003G396600 Sobic006G120700--Sobic010G144900 Sobic010G265900 Sobic010G265900 Sobic006G120700--Sobic010G265900 Sobic006G120700--Sobic002G236700 Sobic006G120700--Sobic007G044400 Sobic006G120700--Sobic006G102900 Sobic001G475500 Sobic001G475500 Sobic003G122200--Sobic001G475500 Sobic001G418100 Sobic001G418100 Sobic003G122200--Sobic001G418100 Sobic007G150800 Sobic007G150800 Sobic003G122200--Sobic007G150800 Sobic005G112800 Sobic005G112800 Sobic003G122200--Sobic005G112800 Sobic003G034600 Sobic003G034600 Sobic003G122200--Sobic003G034600 Sobic010G264300 Sobic010G264300 Sobic003G122200--Sobic010G264300 Sobic001G038300 Sobic001G038300 Sobic003G122200--Sobic001G038300 Sobic004G055700 Sobic004G055700 Sobic003G122200--Sobic004G055700 Sobic001G040100 Sobic001G040100 Sobic003G122200--Sobic001G040100 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic003G396600--Sobic001G397000 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic009G165500 Sobic009G165500 Sobic003G084300--Sobic009G165500 Sobic003G084300--Sobic009G189200 Sobic003G084300--Sobic003G011100 Sobic002G385400 Sobic002G385400 Sobic003G084300--Sobic002G385400 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic003G084300--Sobic006G200000 Sobic003G084300--Sobic006G102900 Sobic010G101600 Sobic010G101600 Sobic009G111400--Sobic010G101600 Sobic002G090300 Sobic002G090300 Sobic009G111400--Sobic002G090300 Sobic003G096000 Sobic003G096000 Sobic009G111400--Sobic003G096000 Sobic010G190300 Sobic010G190300 Sobic009G111400--Sobic010G190300 Sobic010G089500 Sobic010G089500 Sobic009G111400--Sobic010G089500 Sobic006G224000 Sobic006G224000 Sobic009G111400--Sobic006G224000 Sobic009G111400--Sobic002G186900 Sobic004G056400 Sobic004G056400 Sobic009G111400--Sobic004G056400 Sobic009G111400--Sobic004G055700
Octagon: transcription factors


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