Gene annotation
Transcriptome id Sobic.006G104100.1
Synonym Sb06g018720
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5Y9S1
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF320
NCBI CDD KOG1209; 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G10050 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g38420.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011140
Brachypodium KQJ82941
Barley HORVU2Hr1G079930.1 , HORVU2Hr1G079930.3 , HORVU5Hr1G070420.2 , HORVU5Hr1G070420.1 , HORVU5Hr1G001570.1 , HORVU5Hr1G001570.2 , HORVU5Hr1G001570.3
Wheat TraesCS2A02G342700 , TraesCS2B02G340400 , TraesCS2D02G321100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G144900 fiber protein Fb34, putative, expressed -
2 Sobic.007G191800 expressed protein -
3 Sobic.005G110442 - K00432: gpx, btuE, glutathione peroxidase
4 Sobic.010G217100 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
5 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
6 Sobic.006G038200 receptor protein kinase, putative, expressed -
7 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
8 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
9 Sobic.006G191700 expansin precursor, putative, expressed -
10 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
11 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
12 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
13 Sobic.007G044400 MSP domain containing protein, expressed -
14 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
15 Sobic.008G093200 expressed protein -
16 Sobic.003G072900 OsRhmbd18 - Putative Rhomboid homologue, expressed -
17 Sobic.005G129201 - -
18 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
19 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -
20 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2


Gene co-expression network
sample Sobic006G104100 Sobic006G104100 Sobic010G144900 Sobic010G144900 Sobic006G104100--Sobic010G144900 Sobic007G191800 Sobic007G191800 Sobic006G104100--Sobic007G191800 Sobic005G110442 Sobic005G110442 Sobic006G104100--Sobic005G110442 Sobic010G217100 Sobic010G217100 Sobic006G104100--Sobic010G217100 Sobic001G116000 Sobic001G116000 Sobic006G104100--Sobic001G116000 Sobic006G038200 Sobic006G038200 Sobic006G104100--Sobic006G038200 Sobic009G189200 Sobic009G189200 Sobic006G104100--Sobic009G189200 Sobic001G196100 Sobic001G196100 Sobic006G104100--Sobic001G196100 Sobic006G191700 Sobic006G191700 Sobic006G104100--Sobic006G191700 Sobic010G144900--Sobic009G189200 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic007G191800--Sobic006G104100 Sobic007G092100 Sobic007G092100 Sobic007G191800--Sobic007G092100 Sobic001G035400 Sobic001G035400 Sobic007G191800--Sobic001G035400 Sobic001G096100 Sobic001G096100 Sobic007G191800--Sobic001G096100 Sobic008G084100 Sobic008G084100 Sobic007G191800--Sobic008G084100 Sobic008G132400 Sobic008G132400 Sobic007G191800--Sobic008G132400 Sobic007G191800--Sobic001G196100 Sobic001G281900 Sobic001G281900 Sobic007G191800--Sobic001G281900 Sobic001G057300 Sobic001G057300 Sobic007G191800--Sobic001G057300 Sobic005G110442--Sobic006G104100 Sobic009G151700 Sobic009G151700 Sobic005G110442--Sobic009G151700 Sobic003G386200 Sobic003G386200 Sobic005G110442--Sobic003G386200 Sobic005G110442--Sobic006G038200 Sobic005G110442--Sobic010G144900 Sobic008G174900 Sobic008G174900 Sobic005G110442--Sobic008G174900 Sobic001G112700 Sobic001G112700 Sobic005G110442--Sobic001G112700 Sobic005G110442--Sobic007G191800 Sobic002G333800 Sobic002G333800 Sobic005G110442--Sobic002G333800 Sobic010G217100--Sobic006G104100 Sobic010G217100--Sobic010G144900 Sobic009G124200 Sobic009G124200 Sobic010G217100--Sobic009G124200 Sobic010G138500 Sobic010G138500 Sobic010G217100--Sobic010G138500 Sobic003G003700 Sobic003G003700 Sobic010G217100--Sobic003G003700 Sobic009G224600 Sobic009G224600 Sobic010G217100--Sobic009G224600 Sobic001G468500 Sobic001G468500 Sobic010G217100--Sobic001G468500 Sobic001G226100 Sobic001G226100 Sobic010G217100--Sobic001G226100 Sobic010G217100--Sobic006G191700 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic003G170300 Sobic003G170300 Sobic006G038200--Sobic003G170300 Sobic004G282700 Sobic004G282700 Sobic006G038200--Sobic004G282700 Sobic002G338400 Sobic002G338400 Sobic006G038200--Sobic002G338400 Sobic010G264300 Sobic010G264300 Sobic006G038200--Sobic010G264300 Sobic008G178800 Sobic008G178800 Sobic006G038200--Sobic008G178800 Sobic009G017500 Sobic009G017500 Sobic006G038200--Sobic009G017500 Sobic003G216500 Sobic003G216500 Sobic006G038200--Sobic003G216500 Sobic001G035600 Sobic001G035600 Sobic006G038200--Sobic001G035600 Sobic006G075000 Sobic006G075000 Sobic006G038200--Sobic006G075000 Sobic006G102900 Sobic006G102900 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic009G189200--Sobic010G144900 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic001G196100--Sobic001G116000 Sobic001G196100--Sobic007G044400 Sobic001G196100--Sobic001G281900 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic006G191700--Sobic001G261549 Sobic001G107200 Sobic001G107200 Sobic006G191700--Sobic001G107200 Sobic006G278100 Sobic006G278100 Sobic006G191700--Sobic006G278100 Sobic006G191700--Sobic009G189200 Sobic001G528600 Sobic001G528600 Sobic006G191700--Sobic001G528600 Sobic007G094400 Sobic007G094400 Sobic006G191700--Sobic007G094400 Sobic008G096200 Sobic008G096200 Sobic006G191700--Sobic008G096200 Sobic004G331200 Sobic004G331200 Sobic006G191700--Sobic004G331200 Sobic001G078600 Sobic001G078600 Sobic006G191700--Sobic001G078600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.