Gene annotation
Transcriptome id Sobic.007G044400.1,Sobic.007G044400.2
Synonym Sb07g003700
Functional annotation MSP domain containing protein, expressed
UniProt A0A1B6PFI3 , A0A1B6PFJ3
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF43
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT4G00170 : Plant VAMP (vesicle-associated membrane protein) family protein
RAP-DB (Rice) LOC_Os08g05890.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055178
Brachypodium KQJ95348
Barley HORVU0Hr1G021390.8 , HORVU0Hr1G021390.2 , HORVU0Hr1G021390.6 , HORVU0Hr1G021390.3 , HORVU0Hr1G021390.1 , HORVU0Hr1G021390.7 , HORVU0Hr1G021390.5 , HORVU0Hr1G021390.4
Wheat TraesCS7A02G301500 , TraesCS7D02G296900 , TraesCS7B02G201800 , TraesCS7B02G201800
Populus -


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cDNA sequences
Sobic.007G044400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
2 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
3 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
4 Sobic.001G026600 - -
5 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
6 Sobic.006G102900 expressed protein -
7 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
8 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
9 Sobic.007G183800 ankyrin repeat-containing protein, putative, expressed -
10 Sobic.010G144900 fiber protein Fb34, putative, expressed -
11 Sobic.005G047000 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
12 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
13 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
14 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
15 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
16 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.008G141200 DUF1336 domain containing protein, expressed -
18 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
19 Sobic.002G177700 acetyltransferase type B catalytic subunit, putative, expressed K11303: HAT1, histone acetyltransferase 1
20 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL


Gene co-expression network
sample Sobic007G044400 Sobic007G044400 Sobic001G196100 Sobic001G196100 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic001G116000 Sobic001G116000 Sobic007G044400--Sobic001G116000 Sobic001G026600 Sobic001G026600 Sobic007G044400--Sobic001G026600 Sobic002G313600 Sobic002G313600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic001G196100--Sobic001G116000 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic001G026600--Sobic001G530800 Sobic001G026600--Sobic007G044400 Sobic010G277000 Sobic010G277000 Sobic001G026600--Sobic010G277000 Sobic001G026600--Sobic001G196100 Sobic001G026600--Sobic001G116000 Sobic001G026600--Sobic008G084100 Sobic001G026600--Sobic003G319000 Sobic001G026600--Sobic002G313600 Sobic001G436100 Sobic001G436100 Sobic001G026600--Sobic001G436100 Sobic002G313600--Sobic001G116000 Sobic002G313600--Sobic007G044400 Sobic002G313600--Sobic001G196100 Sobic003G134800 Sobic003G134800 Sobic002G313600--Sobic003G134800 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic002G313600--Sobic001G530800 Sobic002G313600--Sobic001G281900 Sobic003G017500 Sobic003G017500 Sobic002G313600--Sobic003G017500 Sobic001G078600 Sobic001G078600 Sobic006G102900--Sobic001G078600 Sobic003G107200 Sobic003G107200 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic007G154500 Sobic007G154500 Sobic006G102900--Sobic007G154500 Sobic002G426800 Sobic002G426800 Sobic006G102900--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200 Sobic008G168100 Sobic008G168100 Sobic009G059500--Sobic008G168100 Sobic002G271300 Sobic002G271300 Sobic009G059500--Sobic002G271300 Sobic009G059500--Sobic002G186900 Sobic008G126600 Sobic008G126600 Sobic009G059500--Sobic008G126600 Sobic003G294100 Sobic003G294100 Sobic009G059500--Sobic003G294100 Sobic008G141200 Sobic008G141200 Sobic009G059500--Sobic008G141200 Sobic001G228200 Sobic001G228200 Sobic009G059500--Sobic001G228200 Sobic004G054000 Sobic004G054000 Sobic009G059500--Sobic004G054000 Sobic009G059500--Sobic007G044400 Sobic002G186900--Sobic009G059500 Sobic002G186900--Sobic002G271300 Sobic003G096000 Sobic003G096000 Sobic002G186900--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic002G186900--Sobic010G089500 Sobic010G101600 Sobic010G101600 Sobic002G186900--Sobic010G101600 Sobic004G056400 Sobic004G056400 Sobic002G186900--Sobic004G056400 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic002G186900--Sobic007G044400 Sobic007G183800--Sobic007G044400 Sobic001G157800 Sobic001G157800 Sobic007G183800--Sobic001G157800 Sobic004G217450 Sobic004G217450 Sobic007G183800--Sobic004G217450 Sobic004G344500 Sobic004G344500 Sobic007G183800--Sobic004G344500 Sobic007G183800--Sobic003G084300 Sobic009G182300 Sobic009G182300 Sobic007G183800--Sobic009G182300 Sobic006G271300 Sobic006G271300 Sobic007G183800--Sobic006G271300 Sobic010G265900 Sobic010G265900 Sobic007G183800--Sobic010G265900 Sobic006G083000 Sobic006G083000 Sobic007G183800--Sobic006G083000
Octagon: transcription factors


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