Gene annotation
Transcriptome id Sobic.002G313600.1,Sobic.002G313600.2
Synonym Sb02g034310
Functional annotation src homology-3 domain protein 3, putative, expressed
UniProt C5X9D6
Pfam PF14604
Panther DB PTHR10663 PTHR10663:SF163
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G18060 : SH3 domain-containing protein
RAP-DB (Rice) LOC_Os07g32460.1 : src homology-3 domain protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a014752
Brachypodium KQK16073 , KQK16074
Barley -
Wheat TraesCS2A02G226200 , TraesCS2A02G226200 , TraesCS2D02G231700 , TraesCS2B02G249500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G313600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
2 Sobic.007G044400 MSP domain containing protein, expressed -
3 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
4 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
5 Sobic.001G026600 - -
6 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
7 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
8 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
9 Sobic.003G017500 TTL1, putative, expressed -
10 Sobic.003G143700 ATP-citrate synthase subunit 1, putative, expressed K01648: ATP citrate (pro-S)-lyase
11 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
12 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
13 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
14 Sobic.004G010700 expressed protein -
15 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
16 Sobic.006G207400 expressed protein -
17 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
18 Sobic.008G093200 expressed protein -
19 Sobic.008G072200 coatomer subunit delta, putative, expressed -
20 Sobic.002G254500 oxidoreductase, putative, expressed K18160: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2


Gene co-expression network
sample Sobic002G313600 Sobic002G313600 Sobic001G116000 Sobic001G116000 Sobic002G313600--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic002G313600--Sobic007G044400 Sobic001G196100 Sobic001G196100 Sobic002G313600--Sobic001G196100 Sobic003G134800 Sobic003G134800 Sobic002G313600--Sobic003G134800 Sobic001G026600 Sobic001G026600 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic001G530800 Sobic001G530800 Sobic002G313600--Sobic001G530800 Sobic001G281900 Sobic001G281900 Sobic002G313600--Sobic001G281900 Sobic003G017500 Sobic003G017500 Sobic002G313600--Sobic003G017500 Sobic001G116000--Sobic001G196100 Sobic001G035400 Sobic001G035400 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic007G044400--Sobic001G116000 Sobic007G044400--Sobic001G026600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic001G196100--Sobic001G116000 Sobic001G196100--Sobic007G044400 Sobic001G196100--Sobic001G281900 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G196100--Sobic001G530800 Sobic002G070600 Sobic002G070600 Sobic003G134800--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic003G134800--Sobic008G072200 Sobic002G141700 Sobic002G141700 Sobic003G134800--Sobic002G141700 Sobic010G178600 Sobic010G178600 Sobic003G134800--Sobic010G178600 Sobic001G117800 Sobic001G117800 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic001G220900 Sobic001G220900 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G143700 Sobic003G143700 Sobic003G134800--Sobic003G143700 Sobic001G026600--Sobic001G530800 Sobic001G026600--Sobic007G044400 Sobic010G277000 Sobic010G277000 Sobic001G026600--Sobic010G277000 Sobic001G026600--Sobic001G196100 Sobic001G026600--Sobic001G116000 Sobic001G026600--Sobic008G084100 Sobic001G026600--Sobic003G319000 Sobic001G026600--Sobic002G313600 Sobic001G436100 Sobic001G436100 Sobic001G026600--Sobic001G436100 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic001G108400--Sobic002G313600 Sobic009G001200 Sobic009G001200 Sobic001G108400--Sobic009G001200 Sobic001G404700 Sobic001G404700 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic001G108400--Sobic003G017500 Sobic001G169800 Sobic001G169800 Sobic001G108400--Sobic001G169800 Sobic001G108400--Sobic001G026600 Sobic004G047200 Sobic004G047200 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G530800--Sobic001G026600 Sobic001G371100 Sobic001G371100 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G530800--Sobic001G196100 Sobic001G530800--Sobic010G277000 Sobic003G330500 Sobic003G330500 Sobic001G281900--Sobic003G330500 Sobic005G105500 Sobic005G105500 Sobic001G281900--Sobic005G105500 Sobic008G150300 Sobic008G150300 Sobic001G281900--Sobic008G150300 Sobic006G252200 Sobic006G252200 Sobic001G281900--Sobic006G252200 Sobic001G281900--Sobic001G196100 Sobic001G458700 Sobic001G458700 Sobic001G281900--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G281900--Sobic007G176200 Sobic001G338400 Sobic001G338400 Sobic001G281900--Sobic001G338400 Sobic001G096100 Sobic001G096100 Sobic001G281900--Sobic001G096100 Sobic002G383100 Sobic002G383100 Sobic003G017500--Sobic002G383100 Sobic001G051300 Sobic001G051300 Sobic003G017500--Sobic001G051300 Sobic007G130900 Sobic007G130900 Sobic003G017500--Sobic007G130900 Sobic001G437500 Sobic001G437500 Sobic003G017500--Sobic001G437500 Sobic007G139500 Sobic007G139500 Sobic003G017500--Sobic007G139500 Sobic009G073400 Sobic009G073400 Sobic003G017500--Sobic009G073400 Sobic009G206500 Sobic009G206500 Sobic003G017500--Sobic009G206500 Sobic001G159800 Sobic001G159800 Sobic003G017500--Sobic001G159800 Sobic003G017500--Sobic003G410600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.