Gene annotation
Transcriptome id Sobic.004G010700.1
Synonym Sb04g001080
Functional annotation expressed protein
UniProt C5XS95
Pfam -
Panther DB PTHR13359 PTHR13359:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05400 : copper ion binding
RAP-DB (Rice) LOC_Os01g32790.1 : expressed protein
MaizeGDB (Corn) Zm00025a021443
Brachypodium KQJ97061
Barley -
Wheat TraesCS5B02G379000 , TraesCS4A02G348500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
2 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
3 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
4 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
5 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
6 Sobic.006G129900 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
7 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
8 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
9 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
10 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
11 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
12 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
13 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
14 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
15 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
16 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
17 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
18 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
19 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
20 Sobic.005G047000 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6


Gene co-expression network
sample Sobic004G010700 Sobic004G010700 Sobic009G201800 Sobic009G201800 Sobic004G010700--Sobic009G201800 Sobic009G258500 Sobic009G258500 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic001G382200 Sobic001G382200 Sobic004G010700--Sobic001G382200 Sobic009G234400 Sobic009G234400 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic009G258500--Sobic001G382200 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic009G258500--Sobic004G249300 Sobic008G135000 Sobic008G135000 Sobic002G054000--Sobic008G135000 Sobic009G233400 Sobic009G233400 Sobic002G054000--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G054000--Sobic001G058900 Sobic005G050500 Sobic005G050500 Sobic002G054000--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic002G054000--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic002G054000--Sobic002G304900 Sobic004G342400 Sobic004G342400 Sobic002G054000--Sobic004G342400 Sobic009G191200 Sobic009G191200 Sobic002G054000--Sobic009G191200 Sobic010G005300 Sobic010G005300 Sobic002G054000--Sobic010G005300 Sobic002G101000--Sobic009G104100 Sobic007G220900 Sobic007G220900 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic002G101000--Sobic005G050500 Sobic009G101700 Sobic009G101700 Sobic002G101000--Sobic009G101700 Sobic002G101000--Sobic002G054000 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic009G002000 Sobic009G002000 Sobic002G277200--Sobic009G002000 Sobic002G277200--Sobic004G010700 Sobic002G277200--Sobic009G258500 Sobic002G277200--Sobic009G201800 Sobic001G157600 Sobic001G157600 Sobic002G277200--Sobic001G157600 Sobic003G410400 Sobic003G410400 Sobic002G277200--Sobic003G410400 Sobic009G102900 Sobic009G102900 Sobic002G277200--Sobic009G102900 Sobic006G127500 Sobic006G127500 Sobic002G277200--Sobic006G127500 Sobic002G142700 Sobic002G142700 Sobic002G277200--Sobic002G142700 Sobic005G047000 Sobic005G047000 Sobic006G129900--Sobic005G047000 Sobic006G129900--Sobic004G010700 Sobic005G178300 Sobic005G178300 Sobic006G129900--Sobic005G178300 Sobic010G258000 Sobic010G258000 Sobic006G129900--Sobic010G258000 Sobic007G165300 Sobic007G165300 Sobic006G129900--Sobic007G165300 Sobic004G015300 Sobic004G015300 Sobic006G129900--Sobic004G015300 Sobic003G248300 Sobic003G248300 Sobic006G129900--Sobic003G248300 Sobic001G176900 Sobic001G176900 Sobic006G129900--Sobic001G176900 Sobic005G110526 Sobic005G110526 Sobic006G129900--Sobic005G110526 Sobic001G382200--Sobic009G258500 Sobic001G382200--Sobic009G201800 Sobic003G118400 Sobic003G118400 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic001G382200--Sobic008G016100 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800 Sobic009G234400--Sobic009G212300 Sobic006G211800 Sobic006G211800 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic009G234400--Sobic001G404100 Sobic005G105500 Sobic005G105500 Sobic009G234400--Sobic005G105500 Sobic009G234400--Sobic003G028100 Sobic001G481700 Sobic001G481700 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic009G104100--Sobic002G101000 Sobic009G104100--Sobic001G481700 Sobic004G224900 Sobic004G224900 Sobic009G104100--Sobic004G224900 Sobic009G104100--Sobic005G050500 Sobic009G104100--Sobic007G220900 Sobic003G330500 Sobic003G330500 Sobic009G104100--Sobic003G330500 Sobic008G132400 Sobic008G132400 Sobic009G104100--Sobic008G132400 Sobic001G057300 Sobic001G057300 Sobic009G104100--Sobic001G057300 Sobic007G076300 Sobic007G076300 Sobic009G104100--Sobic007G076300
Octagon: transcription factors


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