Gene annotation
Transcriptome id Sobic.001G382200.1
Synonym Sb01g036250, EMB1401, EIF2BETA
Functional annotation eukaryotic translation initiation factor 2 subunit beta, putative, expressed
UniProt C5X0U6
Pfam PF01873
Panther DB PTHR23001
NCBI CDD KOG2768; Translation initiation factor 2, beta subunit (eIF-2beta)
KEGG Orthology K03238; translation initiation factor 2 subunit 2
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT5G20920 : eukaryotic translation initiation factor 2 beta subunit
RAP-DB (Rice) LOC_Os03g21550.1 : eukaryotic translation initiation factor 2 subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a015450 , Zm00025a002337
Brachypodium KQK21819 , KQK21817
Barley HORVU4Hr1G050630.8 , HORVU4Hr1G050630.1 , HORVU4Hr1G050630.2 , HORVU4Hr1G050630.3 , HORVU4Hr1G050630.4 , HORVU4Hr1G050630.5 , HORVU4Hr1G050630.6 , HORVU4Hr1G050630.7
Wheat TraesCS4D02G172900 , TraesCS4B02G170900 , TraesCS4A02G134000
Populus -


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cDNA sequences
Sobic.001G382200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
2 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
3 Sobic.003G118400 expressed protein -
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
6 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
7 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
8 Sobic.004G010700 expressed protein -
9 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
10 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
11 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
12 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
13 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
14 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
15 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
16 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
17 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
18 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
19 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
20 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K


Gene co-expression network
sample Sobic001G382200 Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic001G382200--Sobic009G258500 Sobic009G201800 Sobic009G201800 Sobic001G382200--Sobic009G201800 Sobic003G118400 Sobic003G118400 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic009G234400 Sobic009G234400 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic008G016100 Sobic008G016100 Sobic001G382200--Sobic008G016100 Sobic004G010700 Sobic004G010700 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800 Sobic009G258500--Sobic001G382200 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic009G258500--Sobic008G016100 Sobic004G249300 Sobic004G249300 Sobic009G258500--Sobic004G249300 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic002G254500 Sobic002G254500 Sobic003G118400--Sobic002G254500 Sobic003G118400--Sobic001G382200 Sobic003G118400--Sobic001G530800 Sobic003G118400--Sobic004G249300 Sobic002G116500 Sobic002G116500 Sobic003G118400--Sobic002G116500 Sobic003G125100 Sobic003G125100 Sobic003G118400--Sobic003G125100 Sobic009G169200 Sobic009G169200 Sobic003G118400--Sobic009G169200 Sobic006G094600 Sobic006G094600 Sobic003G118400--Sobic006G094600 Sobic003G222700 Sobic003G222700 Sobic003G118400--Sobic003G222700 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic009G234400--Sobic009G212300 Sobic006G211800 Sobic006G211800 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic009G234400--Sobic005G105500 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic004G194900 Sobic004G194900 Sobic002G394600--Sobic004G194900 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic003G408300 Sobic003G408300 Sobic008G016100--Sobic003G408300 Sobic008G016100--Sobic002G116500 Sobic008G016100--Sobic001G382200 Sobic006G135900 Sobic006G135900 Sobic008G016100--Sobic006G135900 Sobic008G016100--Sobic009G258500 Sobic001G193500 Sobic001G193500 Sobic008G016100--Sobic001G193500 Sobic001G471000 Sobic001G471000 Sobic008G016100--Sobic001G471000 Sobic009G219400 Sobic009G219400 Sobic008G016100--Sobic009G219400 Sobic001G007800 Sobic001G007800 Sobic008G016100--Sobic001G007800 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic004G010700--Sobic001G382200 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G371100 Sobic001G371100 Sobic001G530800--Sobic001G371100 Sobic001G530800--Sobic009G234400 Sobic002G423500 Sobic002G423500 Sobic001G530800--Sobic002G423500 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000
Octagon: transcription factors


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