Gene annotation
Transcriptome id Sobic.008G016100.1
Synonym Sb08g001420
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YQM2
Pfam PF12265 PF00400
Panther DB PTHR22850 PTHR22850:SF6
NCBI CDD -
KEGG Orthology K14848; RRB1, ribosome assembly protein RRB1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G19540 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os12g03822.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028957 , Zm00025a038055
Brachypodium -
Barley HORVU4Hr1G026330.1 , HORVU4Hr1G026330.2 , HORVU4Hr1G026330.3 , HORVU4Hr1G026330.4 , HORVU4Hr1G026330.5 , HORVU4Hr1G026330.6 , HORVU4Hr1G026330.7 , HORVU4Hr1G026330.8 , HORVU4Hr1G026330.9 , HORVU4Hr1G026330.10 , HORVU4Hr1G026330.11
Wheat TraesCS4D02G126000 , TraesCS5B02G137200 , TraesCS4A02G187400 , TraesCS4B02G131200 , TraesCS4B02G131200
Populus -


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cDNA sequences
Sobic.008G016100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
2 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
3 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
4 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
5 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
6 Sobic.001G193500 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
7 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
8 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
9 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
10 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
11 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
12 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
13 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
14 Sobic.003G338100 methionyl-tRNA synthetase, putative, expressed K15437: AIMP1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1
15 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
16 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
17 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
18 Sobic.004G333800 ribosomal RNA large subunit methyltransferase J, putative, expressed K14864: FTSJ1, tRNA (cytidine32/guanosine34-2'-O)-methyltransferase
19 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
20 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H


Gene co-expression network
sample Sobic008G016100 Sobic008G016100 Sobic003G408300 Sobic003G408300 Sobic008G016100--Sobic003G408300 Sobic002G116500 Sobic002G116500 Sobic008G016100--Sobic002G116500 Sobic001G382200 Sobic001G382200 Sobic008G016100--Sobic001G382200 Sobic006G135900 Sobic006G135900 Sobic008G016100--Sobic006G135900 Sobic009G258500 Sobic009G258500 Sobic008G016100--Sobic009G258500 Sobic001G193500 Sobic001G193500 Sobic008G016100--Sobic001G193500 Sobic001G471000 Sobic001G471000 Sobic008G016100--Sobic001G471000 Sobic009G219400 Sobic009G219400 Sobic008G016100--Sobic009G219400 Sobic001G007800 Sobic001G007800 Sobic008G016100--Sobic001G007800 Sobic003G408300--Sobic008G016100 Sobic002G263200 Sobic002G263200 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic006G084000 Sobic006G084000 Sobic003G408300--Sobic006G084000 Sobic002G332200 Sobic002G332200 Sobic003G408300--Sobic002G332200 Sobic006G251500 Sobic006G251500 Sobic003G408300--Sobic006G251500 Sobic009G143800 Sobic009G143800 Sobic003G408300--Sobic009G143800 Sobic002G116500--Sobic001G193500 Sobic002G116500--Sobic008G016100 Sobic003G118400 Sobic003G118400 Sobic002G116500--Sobic003G118400 Sobic004G247100 Sobic004G247100 Sobic002G116500--Sobic004G247100 Sobic002G116500--Sobic001G382200 Sobic002G116500--Sobic003G408300 Sobic002G116500--Sobic006G084000 Sobic002G144275 Sobic002G144275 Sobic002G116500--Sobic002G144275 Sobic009G195700 Sobic009G195700 Sobic002G116500--Sobic009G195700 Sobic001G382200--Sobic009G258500 Sobic009G201800 Sobic009G201800 Sobic001G382200--Sobic009G201800 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic009G234400 Sobic009G234400 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic001G382200--Sobic008G016100 Sobic004G010700 Sobic004G010700 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800 Sobic008G160000 Sobic008G160000 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic006G135900--Sobic008G016100 Sobic009G258500--Sobic001G382200 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic009G258500--Sobic008G016100 Sobic004G249300 Sobic004G249300 Sobic009G258500--Sobic004G249300 Sobic010G169300 Sobic010G169300 Sobic001G193500--Sobic010G169300 Sobic001G193500--Sobic002G116500 Sobic002G014400 Sobic002G014400 Sobic001G193500--Sobic002G014400 Sobic007G177300 Sobic007G177300 Sobic001G193500--Sobic007G177300 Sobic001G193500--Sobic008G016100 Sobic001G193500--Sobic001G471000 Sobic001G467100 Sobic001G467100 Sobic001G193500--Sobic001G467100 Sobic009G077600 Sobic009G077600 Sobic001G193500--Sobic009G077600 Sobic005G163700 Sobic005G163700 Sobic001G193500--Sobic005G163700 Sobic007G112600 Sobic007G112600 Sobic001G471000--Sobic007G112600 Sobic010G235200 Sobic010G235200 Sobic001G471000--Sobic010G235200 Sobic006G142400 Sobic006G142400 Sobic001G471000--Sobic006G142400 Sobic007G042900 Sobic007G042900 Sobic001G471000--Sobic007G042900 Sobic004G068500 Sobic004G068500 Sobic001G471000--Sobic004G068500 Sobic005G155100 Sobic005G155100 Sobic001G471000--Sobic005G155100 Sobic007G077400 Sobic007G077400 Sobic001G471000--Sobic007G077400 Sobic001G477700 Sobic001G477700 Sobic001G471000--Sobic001G477700 Sobic007G162800 Sobic007G162800 Sobic001G471000--Sobic007G162800 Sobic009G219400--Sobic002G394600 Sobic009G222900 Sobic009G222900 Sobic009G219400--Sobic009G222900 Sobic005G003800 Sobic005G003800 Sobic009G219400--Sobic005G003800 Sobic004G310500 Sobic004G310500 Sobic009G219400--Sobic004G310500 Sobic009G190300 Sobic009G190300 Sobic009G219400--Sobic009G190300 Sobic002G243200 Sobic002G243200 Sobic009G219400--Sobic002G243200 Sobic001G050700 Sobic001G050700 Sobic009G219400--Sobic001G050700 Sobic009G219400--Sobic008G016100 Sobic009G219400--Sobic002G341800 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic004G307500 Sobic004G307500 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800
Octagon: transcription factors


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