Gene annotation
Transcriptome id Sobic.003G338100.1,Sobic.003G338100.2
Synonym Sb03g038230
Functional annotation methionyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q6T2 , A0A1B6Q6T8
Pfam PF01588
Panther DB PTHR11586 PTHR11586:SF1
NCBI CDD KOG2241; tRNA-binding protein
KEGG Orthology K15437; AIMP1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1
Gene Ontology GO:0000049; tRNA binding


Orthologs (automatic annotation)
TAIR AT2G40660 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os01g60660.1 : methionyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a039766
Brachypodium PNT73119 , PNT73120
Barley HORVU3Hr1G081060.12 , HORVU3Hr1G081060.10 , HORVU3Hr1G081060.11 , HORVU3Hr1G081060.8 , HORVU3Hr1G081060.9 , HORVU3Hr1G081060.1 , HORVU3Hr1G081060.2 , HORVU3Hr1G081060.3 , HORVU3Hr1G081060.4 , HORVU3Hr1G081060.5 , HORVU3Hr1G081060.6 , HORVU3Hr1G081060.7
Wheat TraesCS3A02G344100 , TraesCS3A02G344100 , TraesCS3D02G337700 , TraesCS3B02G376000 , TraesCS3B02G376000 , TraesCS3D02G337700
Populus -


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cDNA sequences
Sobic.003G338100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
2 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
3 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
6 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
7 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.009G232400 expressed protein -
10 Sobic.004G141700 expressed protein -
11 Sobic.006G049700 SAM domain family protein, expressed -
12 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
13 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
14 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
15 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
16 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
17 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
18 Sobic.006G225300 expressed protein -
19 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
20 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H


Gene co-expression network
sample Sobic003G338100 Sobic003G338100 Sobic009G190300 Sobic009G190300 Sobic003G338100--Sobic009G190300 Sobic004G212200 Sobic004G212200 Sobic003G338100--Sobic004G212200 Sobic001G082100 Sobic001G082100 Sobic003G338100--Sobic001G082100 Sobic001G294900 Sobic001G294900 Sobic003G338100--Sobic001G294900 Sobic006G044600 Sobic006G044600 Sobic003G338100--Sobic006G044600 Sobic001G402300 Sobic001G402300 Sobic003G338100--Sobic001G402300 Sobic010G193800 Sobic010G193800 Sobic003G338100--Sobic010G193800 Sobic008G153500 Sobic008G153500 Sobic003G338100--Sobic008G153500 Sobic009G232400 Sobic009G232400 Sobic003G338100--Sobic009G232400 Sobic005G003800 Sobic005G003800 Sobic009G190300--Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic009G190300--Sobic008G004000 Sobic001G481700 Sobic001G481700 Sobic009G190300--Sobic001G481700 Sobic002G341800 Sobic002G341800 Sobic009G190300--Sobic002G341800 Sobic009G190300--Sobic003G338100 Sobic002G394600 Sobic002G394600 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic001G404100 Sobic001G404100 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic002G393500 Sobic002G393500 Sobic004G212200--Sobic002G393500 Sobic009G228800 Sobic009G228800 Sobic004G212200--Sobic009G228800 Sobic003G261400 Sobic003G261400 Sobic004G212200--Sobic003G261400 Sobic003G274800 Sobic003G274800 Sobic004G212200--Sobic003G274800 Sobic010G000900 Sobic010G000900 Sobic004G212200--Sobic010G000900 Sobic001G388200 Sobic001G388200 Sobic004G212200--Sobic001G388200 Sobic002G166900 Sobic002G166900 Sobic004G212200--Sobic002G166900 Sobic003G261500 Sobic003G261500 Sobic004G212200--Sobic003G261500 Sobic001G512300 Sobic001G512300 Sobic004G212200--Sobic001G512300 Sobic003G178900 Sobic003G178900 Sobic001G082100--Sobic003G178900 Sobic010G057900 Sobic010G057900 Sobic001G082100--Sobic010G057900 Sobic001G114500 Sobic001G114500 Sobic001G082100--Sobic001G114500 Sobic001G082100--Sobic002G341800 Sobic001G082100--Sobic006G044600 Sobic006G049700 Sobic006G049700 Sobic001G082100--Sobic006G049700 Sobic004G356900 Sobic004G356900 Sobic001G082100--Sobic004G356900 Sobic001G082100--Sobic002G394600 Sobic006G010000 Sobic006G010000 Sobic001G082100--Sobic006G010000 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic006G183000 Sobic006G183000 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic008G153500--Sobic007G166400 Sobic008G153500--Sobic006G049700 Sobic002G361400 Sobic002G361400 Sobic008G153500--Sobic002G361400 Sobic008G153500--Sobic006G010000 Sobic006G101700 Sobic006G101700 Sobic008G153500--Sobic006G101700 Sobic009G095100 Sobic009G095100 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic009G222500 Sobic009G222500 Sobic008G153500--Sobic009G222500 Sobic004G115350 Sobic004G115350 Sobic008G153500--Sobic004G115350 Sobic009G232400--Sobic004G141700 Sobic009G232400--Sobic001G402300 Sobic003G350600 Sobic003G350600 Sobic009G232400--Sobic003G350600 Sobic009G232400--Sobic001G226100 Sobic001G007200 Sobic001G007200 Sobic009G232400--Sobic001G007200 Sobic010G083700 Sobic010G083700 Sobic009G232400--Sobic010G083700 Sobic009G232400--Sobic010G251100 Sobic001G054200 Sobic001G054200 Sobic009G232400--Sobic001G054200 Sobic009G232400--Sobic007G118000
Octagon: transcription factors


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