Gene annotation
Transcriptome id Sobic.008G153500.1
Synonym FLK
Functional annotation KH domain containing protein, putative, expressed
UniProt C5YR01
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF155
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G04610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os12g40560.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017290 , Zm00025a004574
Brachypodium -
Barley -
Wheat TraesCS5A02G059500 , TraesCS5B02G066800 , TraesCS5D02G071000
Populus -


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cDNA sequences
Sobic.008G153500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
2 Sobic.006G049700 SAM domain family protein, expressed -
3 Sobic.002G361400 frigida, putative, expressed -
4 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
5 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
6 Sobic.009G095100 expressed protein -
7 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.009G222500 expressed protein -
9 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
10 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
11 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
12 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
13 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.005G015450 - -
15 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
16 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
17 Sobic.002G192200 proteasome subunit, putative, expressed -
18 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
19 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
20 Sobic.004G266900 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B


Gene co-expression network
sample Sobic008G153500 Sobic008G153500 Sobic007G166400 Sobic007G166400 Sobic008G153500--Sobic007G166400 Sobic006G049700 Sobic006G049700 Sobic008G153500--Sobic006G049700 Sobic002G361400 Sobic002G361400 Sobic008G153500--Sobic002G361400 Sobic006G010000 Sobic006G010000 Sobic008G153500--Sobic006G010000 Sobic006G101700 Sobic006G101700 Sobic008G153500--Sobic006G101700 Sobic009G095100 Sobic009G095100 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic009G222500 Sobic009G222500 Sobic008G153500--Sobic009G222500 Sobic004G115350 Sobic004G115350 Sobic008G153500--Sobic004G115350 Sobic007G166400--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic007G166400--Sobic003G264200 Sobic007G166400--Sobic009G222500 Sobic007G166400--Sobic006G049700 Sobic007G167900 Sobic007G167900 Sobic007G166400--Sobic007G167900 Sobic004G066200 Sobic004G066200 Sobic007G166400--Sobic004G066200 Sobic006G044600 Sobic006G044600 Sobic007G166400--Sobic006G044600 Sobic007G166400--Sobic008G153500 Sobic001G114500 Sobic001G114500 Sobic007G166400--Sobic001G114500 Sobic006G049700--Sobic009G222500 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic002G361400--Sobic008G153500 Sobic004G040200 Sobic004G040200 Sobic002G361400--Sobic004G040200 Sobic003G121300 Sobic003G121300 Sobic002G361400--Sobic003G121300 Sobic002G111600 Sobic002G111600 Sobic002G361400--Sobic002G111600 Sobic001G522600 Sobic001G522600 Sobic002G361400--Sobic001G522600 Sobic004G356800 Sobic004G356800 Sobic002G361400--Sobic004G356800 Sobic002G371700 Sobic002G371700 Sobic002G361400--Sobic002G371700 Sobic002G361400--Sobic009G095100 Sobic008G103300 Sobic008G103300 Sobic002G361400--Sobic008G103300 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic006G010000--Sobic008G153500 Sobic003G293300 Sobic003G293300 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic006G101700--Sobic004G066200 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic009G095100--Sobic001G522600 Sobic007G061000 Sobic007G061000 Sobic009G095100--Sobic007G061000 Sobic003G029100 Sobic003G029100 Sobic009G095100--Sobic003G029100 Sobic003G143200 Sobic003G143200 Sobic009G095100--Sobic003G143200 Sobic009G095100--Sobic009G179700 Sobic008G112800 Sobic008G112800 Sobic009G095100--Sobic008G112800 Sobic004G266900 Sobic004G266900 Sobic009G095100--Sobic004G266900 Sobic009G095100--Sobic008G153500 Sobic004G092500 Sobic004G092500 Sobic009G095100--Sobic004G092500 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic001G356600 Sobic001G356600 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic010G018700 Sobic010G018700 Sobic009G179700--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic009G179700--Sobic003G029100 Sobic009G179700--Sobic007G061000 Sobic001G512700 Sobic001G512700 Sobic009G179700--Sobic001G512700 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic004G115350--Sobic004G356900 Sobic004G115350--Sobic006G049700 Sobic004G115350--Sobic009G222500 Sobic004G202500 Sobic004G202500 Sobic004G115350--Sobic004G202500 Sobic004G115350--Sobic006G101700 Sobic003G099100 Sobic003G099100 Sobic004G115350--Sobic003G099100 Sobic003G349300 Sobic003G349300 Sobic004G115350--Sobic003G349300 Sobic004G115350--Sobic008G153500 Sobic010G209000 Sobic010G209000 Sobic004G115350--Sobic010G209000
Octagon: transcription factors


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