Gene annotation
Transcriptome id Sobic.007G166400.1
Synonym Sb07g023930, MED31
Functional annotation mediator of RNA polymerase II transcription subunit 31, putative, expressed
UniProt C5YN47
Pfam PF05669
Panther DB PTHR13186 PTHR13186:SF0
NCBI CDD KOG4086; Transcriptional regulator SOH1
KEGG Orthology K15153; MED31, mediator of RNA polymerase II transcription subunit 31
Gene Ontology GO:0016592; mediator complex GO:0006355regulation of transcription, DNA-templated GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G19910 : SOH1 family protein
RAP-DB (Rice) LOC_Os07g07020.2 : mediator of RNA polymerase II transcription subunit 31, putative, expressed
MaizeGDB (Corn) Zm00025a005568
Brachypodium PNT67912
Barley HORVU1Hr1G055490.8 , HORVU1Hr1G055490.9 , HORVU1Hr1G055490.6 , HORVU1Hr1G055490.7 , HORVU1Hr1G055490.4 , HORVU1Hr1G055490.5 , HORVU1Hr1G055490.2 , HORVU1Hr1G055490.3 , HORVU1Hr1G055490.10
Wheat -
Populus -


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cDNA sequences
Sobic.007G166400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
2 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
3 Sobic.009G222500 expressed protein -
4 Sobic.006G049700 SAM domain family protein, expressed -
5 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
6 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
7 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
8 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
10 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
11 Sobic.002G192200 proteasome subunit, putative, expressed -
12 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.002G129000 RING zinc finger protein, putative, expressed -
14 Sobic.001G085100 expressed protein -
15 Sobic.006G225300 expressed protein -
16 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
17 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
18 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
19 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
20 Sobic.009G050700 importin subunit alpha, putative, expressed -


Gene co-expression network
sample Sobic007G166400 Sobic007G166400 Sobic006G101700 Sobic006G101700 Sobic007G166400--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic007G166400--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic007G166400--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic007G166400--Sobic006G049700 Sobic007G167900 Sobic007G167900 Sobic007G166400--Sobic007G167900 Sobic004G066200 Sobic004G066200 Sobic007G166400--Sobic004G066200 Sobic006G044600 Sobic006G044600 Sobic007G166400--Sobic006G044600 Sobic008G153500 Sobic008G153500 Sobic007G166400--Sobic008G153500 Sobic001G114500 Sobic001G114500 Sobic007G166400--Sobic001G114500 Sobic006G101700--Sobic004G066200 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic003G264200--Sobic006G049700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic006G049700--Sobic009G222500 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic007G167900--Sobic001G085100 Sobic009G192000 Sobic009G192000 Sobic007G167900--Sobic009G192000 Sobic004G092500 Sobic004G092500 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic007G167900--Sobic002G047700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic008G153500--Sobic007G166400 Sobic008G153500--Sobic006G049700 Sobic002G361400 Sobic002G361400 Sobic008G153500--Sobic002G361400 Sobic006G010000 Sobic006G010000 Sobic008G153500--Sobic006G010000 Sobic008G153500--Sobic006G101700 Sobic009G095100 Sobic009G095100 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic008G153500--Sobic009G222500 Sobic004G115350 Sobic004G115350 Sobic008G153500--Sobic004G115350 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800
Octagon: transcription factors


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