Gene annotation
Transcriptome id Sobic.006G010000.1
Synonym SSP5, Sb06g001010
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt C5YBQ9
Pfam PF03031
Panther DB PTHR12210 PTHR12210:SF71
NCBI CDD KOG1605; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology K17616; CTD small phosphatase-like protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11860 : SCP1-like small phosphatase 5
RAP-DB (Rice) LOC_Os07g10690.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a055438
Brachypodium KQJ85848
Barley HORVU5Hr1G121310.1 , HORVU5Hr1G121310.3 , HORVU5Hr1G121310.2 , HORVU5Hr1G121310.5 , HORVU5Hr1G121310.4
Wheat -
Populus -


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cDNA sequences
Sobic.006G010000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
3 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
5 Sobic.010G186600 expressed protein -
6 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
7 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
8 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
9 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
10 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
11 Sobic.007G084100 expressed protein -
12 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
13 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
14 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
15 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
16 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
17 Sobic.002G009200 - K15456: protein KTI12
18 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
19 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
20 Sobic.004G155600 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic006G010000 Sobic006G010000 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic003G293300 Sobic003G293300 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic006G233300--Sobic006G010000 Sobic002G143900 Sobic002G143900 Sobic006G233300--Sobic002G143900 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic002G394800 Sobic002G394800 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic002G280600 Sobic002G280600 Sobic006G233300--Sobic002G280600 Sobic006G233000--Sobic006G010000 Sobic010G085200 Sobic010G085200 Sobic006G233000--Sobic010G085200 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic006G233000--Sobic001G259000 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic007G166400 Sobic007G166400 Sobic008G153500--Sobic007G166400 Sobic006G049700 Sobic006G049700 Sobic008G153500--Sobic006G049700 Sobic002G361400 Sobic002G361400 Sobic008G153500--Sobic002G361400 Sobic008G153500--Sobic006G010000 Sobic006G101700 Sobic006G101700 Sobic008G153500--Sobic006G101700 Sobic009G095100 Sobic009G095100 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic009G222500 Sobic009G222500 Sobic008G153500--Sobic009G222500 Sobic004G115350 Sobic004G115350 Sobic008G153500--Sobic004G115350 Sobic001G251100 Sobic001G251100 Sobic003G293300--Sobic001G251100 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic003G293300--Sobic002G071000 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic001G291800 Sobic001G291800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic001G234200--Sobic002G071000 Sobic001G234200--Sobic006G049700 Sobic001G234200--Sobic006G010000 Sobic001G234200--Sobic003G293300 Sobic007G079300 Sobic007G079300 Sobic001G234200--Sobic007G079300 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic002G071000--Sobic006G049700
Octagon: transcription factors


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