Gene annotation
Transcriptome id Sobic.003G046300.1
Synonym PER1, UBP14, ATUBP14, TTN6, Sb03g004040
Functional annotation ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
UniProt Q35780 , C5XMS9
Pfam PF13423 PF02148 PF00627
Panther DB PTHR24006 PTHR24006:SF449
NCBI CDD -
KEGG Orthology K11836; USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G20630 : ubiquitin-specific protease 14
RAP-DB (Rice) LOC_Os01g08200.1 : ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
MaizeGDB (Corn) Zm00025a035745
Brachypodium KQK02987 , PNT70068 , PNT70069
Barley HORVU3Hr1G022850.32 , HORVU3Hr1G022850.36 , HORVU3Hr1G022850.37 , HORVU3Hr1G022850.34 , HORVU3Hr1G022850.35 , HORVU3Hr1G022850.33 , HORVU3Hr1G022850.38
Wheat TraesCS3B02G142100 , TraesCS3B02G142100 , TraesCS3A02G122900 , TraesCS3A02G122900 , TraesCS3D02G124600 , TraesCS3D02G124600 , TraesCS3D02G124600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G046300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
2 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
3 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
4 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
5 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
6 Sobic.007G000200 expressed protein -
7 Sobic.002G263600 expressed protein -
8 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
9 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
10 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
11 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
13 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
14 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
15 Sobic.002G295500 expressed protein -
16 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
17 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
18 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
19 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
20 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17


Gene co-expression network
sample Sobic003G046300 Sobic003G046300 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic006G188500--Sobic003G046300 Sobic006G188500--Sobic007G000200 Sobic009G003700 Sobic009G003700 Sobic006G188500--Sobic009G003700 Sobic009G234700 Sobic009G234700 Sobic006G188500--Sobic009G234700 Sobic001G488100 Sobic001G488100 Sobic006G188500--Sobic001G488100 Sobic006G188500--Sobic001G487100 Sobic005G175000 Sobic005G175000 Sobic006G188500--Sobic005G175000 Sobic004G006600 Sobic004G006600 Sobic006G188500--Sobic004G006600 Sobic001G462600 Sobic001G462600 Sobic006G188500--Sobic001G462600 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic008G103300--Sobic003G046300 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic004G131300 Sobic004G131300 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic003G132000--Sobic002G371700 Sobic003G132000--Sobic003G363700 Sobic006G032300 Sobic006G032300 Sobic007G000200--Sobic006G032300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic002G263600--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic002G263600--Sobic010G020400 Sobic010G131900 Sobic010G131900 Sobic002G263600--Sobic010G131900 Sobic009G075800 Sobic009G075800 Sobic002G263600--Sobic009G075800 Sobic002G263600--Sobic003G046300 Sobic009G222500 Sobic009G222500 Sobic002G263600--Sobic009G222500 Sobic001G014800 Sobic001G014800 Sobic002G263600--Sobic001G014800 Sobic006G196300 Sobic006G196300 Sobic002G263600--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic002G263600--Sobic002G008800 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.