Gene annotation
Transcriptome id Sobic.006G188500.1,Sobic.006G188500.2
Synonym Sb06g026200
Functional annotation uncharacterized mscS family protein, putative, expressed
UniProt C5YEG8
Pfam PF00924
Panther DB PTHR30566 PTHR30566:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT4G00290 : Mechanosensitive ion channel protein
RAP-DB (Rice) LOC_Os04g48940.2,LOC_Os04g48940.1 : uncharacterized mscS family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010092
Brachypodium KQJ84176 , PNT61701 , KQJ84177 , KQJ84174 , KQJ84175 , KQJ84178
Barley HORVU2Hr1G094110.3 , HORVU2Hr1G094110.2 , HORVU2Hr1G094110.4
Wheat TraesCS2B02G414200 , TraesCS2B02G414200 , TraesCS2A02G395900 , TraesCS2D02G393600 , TraesCS2D02G393600 , TraesCS2B02G414200
Populus -


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cDNA sequences
Sobic.006G188500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
2 Sobic.007G000200 expressed protein -
3 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
4 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
6 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
7 Sobic.005G175000 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
8 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
9 Sobic.001G462600 retinoblastoma-binding protein-like, putative, expressed K14961: RBBP5, SWD1, COMPASS component SWD1
10 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
11 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
12 Sobic.002G405200 AMP deaminase, putative, expressed K01488: add, adenosine deaminase
13 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
14 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
15 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
16 Sobic.010G089800 expressed protein -
17 Sobic.002G263600 expressed protein -
18 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
19 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
20 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3


Gene co-expression network
sample Sobic006G188500 Sobic006G188500 Sobic003G046300 Sobic003G046300 Sobic006G188500--Sobic003G046300 Sobic007G000200 Sobic007G000200 Sobic006G188500--Sobic007G000200 Sobic009G003700 Sobic009G003700 Sobic006G188500--Sobic009G003700 Sobic009G234700 Sobic009G234700 Sobic006G188500--Sobic009G234700 Sobic001G488100 Sobic001G488100 Sobic006G188500--Sobic001G488100 Sobic001G487100 Sobic001G487100 Sobic006G188500--Sobic001G487100 Sobic005G175000 Sobic005G175000 Sobic006G188500--Sobic005G175000 Sobic004G006600 Sobic004G006600 Sobic006G188500--Sobic004G006600 Sobic001G462600 Sobic001G462600 Sobic006G188500--Sobic001G462600 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic003G046300--Sobic001G487100 Sobic006G032300 Sobic006G032300 Sobic007G000200--Sobic006G032300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic007G145400 Sobic007G145400 Sobic009G003700--Sobic007G145400 Sobic003G050900 Sobic003G050900 Sobic009G003700--Sobic003G050900 Sobic001G248100 Sobic001G248100 Sobic009G003700--Sobic001G248100 Sobic001G097500 Sobic001G097500 Sobic009G003700--Sobic001G097500 Sobic001G118200 Sobic001G118200 Sobic009G003700--Sobic001G118200 Sobic005G110499 Sobic005G110499 Sobic009G003700--Sobic005G110499 Sobic004G053500 Sobic004G053500 Sobic009G003700--Sobic004G053500 Sobic004G147500 Sobic004G147500 Sobic009G003700--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic009G003700--Sobic002G340900 Sobic004G256500 Sobic004G256500 Sobic009G234700--Sobic004G256500 Sobic004G131300 Sobic004G131300 Sobic009G234700--Sobic004G131300 Sobic001G145400 Sobic001G145400 Sobic009G234700--Sobic001G145400 Sobic009G234700--Sobic004G053500 Sobic006G002800 Sobic006G002800 Sobic009G234700--Sobic006G002800 Sobic009G234700--Sobic002G371700 Sobic009G234700--Sobic003G046300 Sobic005G172500 Sobic005G172500 Sobic009G234700--Sobic005G172500 Sobic009G234700--Sobic001G455800 Sobic004G315500 Sobic004G315500 Sobic001G488100--Sobic004G315500 Sobic006G137700 Sobic006G137700 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic001G488100--Sobic009G234700 Sobic010G188000 Sobic010G188000 Sobic001G488100--Sobic010G188000 Sobic001G488100--Sobic006G002800 Sobic001G373000 Sobic001G373000 Sobic001G488100--Sobic001G373000 Sobic009G134900 Sobic009G134900 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic002G199400 Sobic002G199400 Sobic005G175000--Sobic002G199400 Sobic005G175000--Sobic001G487100 Sobic005G175000--Sobic001G506000 Sobic005G175000--Sobic003G046300 Sobic005G175000--Sobic006G188500 Sobic001G469200 Sobic001G469200 Sobic005G175000--Sobic001G469200 Sobic001G408600 Sobic001G408600 Sobic005G175000--Sobic001G408600 Sobic005G175000--Sobic003G132000 Sobic001G456800 Sobic001G456800 Sobic005G175000--Sobic001G456800 Sobic010G233000 Sobic010G233000 Sobic004G006600--Sobic010G233000 Sobic002G263200 Sobic002G263200 Sobic004G006600--Sobic002G263200 Sobic010G186600 Sobic010G186600 Sobic004G006600--Sobic010G186600 Sobic001G098400 Sobic001G098400 Sobic004G006600--Sobic001G098400 Sobic004G006600--Sobic001G373000 Sobic003G330900 Sobic003G330900 Sobic004G006600--Sobic003G330900 Sobic004G006600--Sobic006G188500 Sobic009G255600 Sobic009G255600 Sobic004G006600--Sobic009G255600 Sobic004G006600--Sobic004G315500 Sobic003G221500 Sobic003G221500 Sobic001G462600--Sobic003G221500 Sobic001G462600--Sobic006G188500 Sobic002G142700 Sobic002G142700 Sobic001G462600--Sobic002G142700 Sobic001G462600--Sobic004G256300 Sobic001G462600--Sobic003G128300 Sobic004G177600 Sobic004G177600 Sobic001G462600--Sobic004G177600 Sobic003G222700 Sobic003G222700 Sobic001G462600--Sobic003G222700 Sobic006G212900 Sobic006G212900 Sobic001G462600--Sobic006G212900 Sobic001G462600--Sobic004G315500
Octagon: transcription factors


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