Gene annotation
Transcriptome id Sobic.001G462600.1,Sobic.001G462600.2
Synonym Sb01g043410
Functional annotation retinoblastoma-binding protein-like, putative, expressed
UniProt A0A1Z5SAU0 , C5WTQ5
Pfam -
Panther DB PTHR22847 PTHR22847:SF461
NCBI CDD KOG1273; WD40 repeat protein
KEGG Orthology K14961; RBBP5, SWD1, COMPASS component SWD1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21060 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g10990.1 : retinoblastoma-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a001108
Brachypodium KQK23005
Barley HORVU4Hr1G069350.8 , HORVU4Hr1G069350.7 , HORVU4Hr1G069350.6 , HORVU4Hr1G069350.5 , HORVU4Hr1G069350.4 , HORVU4Hr1G069350.3 , HORVU4Hr1G069350.2
Wheat TraesCS4D02G254200 , TraesCS4D02G254200 , TraesCS4B02G254400 , TraesCS4B02G254400 , TraesCS4B02G254400 , TraesCS4A02G050200 , TraesCS4A02G050200
Populus -


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cDNA sequences
Sobic.001G462600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G221500 CENP-C1, putative, expressed -
2 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
3 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
4 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
5 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
6 Sobic.004G177600 DDT domain containing protein, putative, expressed -
7 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
8 Sobic.006G212900 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
9 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
10 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
11 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
12 Sobic.004G168300 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
13 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
14 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
15 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
16 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
17 Sobic.007G000200 expressed protein -
18 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
19 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
20 Sobic.003G004600 expressed protein -


Gene co-expression network
sample Sobic001G462600 Sobic001G462600 Sobic003G221500 Sobic003G221500 Sobic001G462600--Sobic003G221500 Sobic006G188500 Sobic006G188500 Sobic001G462600--Sobic006G188500 Sobic002G142700 Sobic002G142700 Sobic001G462600--Sobic002G142700 Sobic004G256300 Sobic004G256300 Sobic001G462600--Sobic004G256300 Sobic003G128300 Sobic003G128300 Sobic001G462600--Sobic003G128300 Sobic004G177600 Sobic004G177600 Sobic001G462600--Sobic004G177600 Sobic003G222700 Sobic003G222700 Sobic001G462600--Sobic003G222700 Sobic006G212900 Sobic006G212900 Sobic001G462600--Sobic006G212900 Sobic004G315500 Sobic004G315500 Sobic001G462600--Sobic004G315500 Sobic003G221500--Sobic004G256300 Sobic003G221500--Sobic002G142700 Sobic003G004600 Sobic003G004600 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic003G221500--Sobic001G462600 Sobic006G245700 Sobic006G245700 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G221500--Sobic003G222700 Sobic003G046300 Sobic003G046300 Sobic006G188500--Sobic003G046300 Sobic007G000200 Sobic007G000200 Sobic006G188500--Sobic007G000200 Sobic009G003700 Sobic009G003700 Sobic006G188500--Sobic009G003700 Sobic009G234700 Sobic009G234700 Sobic006G188500--Sobic009G234700 Sobic001G488100 Sobic001G488100 Sobic006G188500--Sobic001G488100 Sobic001G487100 Sobic001G487100 Sobic006G188500--Sobic001G487100 Sobic005G175000 Sobic005G175000 Sobic006G188500--Sobic005G175000 Sobic004G006600 Sobic004G006600 Sobic006G188500--Sobic004G006600 Sobic006G188500--Sobic001G462600 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic002G142700--Sobic004G256300 Sobic002G142700--Sobic003G221500 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic004G256300--Sobic003G004600 Sobic003G132000 Sobic003G132000 Sobic003G128300--Sobic003G132000 Sobic001G458200 Sobic001G458200 Sobic003G128300--Sobic001G458200 Sobic003G128300--Sobic001G487100 Sobic003G148900 Sobic003G148900 Sobic003G128300--Sobic003G148900 Sobic004G320100 Sobic004G320100 Sobic003G128300--Sobic004G320100 Sobic003G128300--Sobic003G046300 Sobic002G306600 Sobic002G306600 Sobic003G128300--Sobic002G306600 Sobic008G103300 Sobic008G103300 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic010G233000 Sobic010G233000 Sobic004G177600--Sobic010G233000 Sobic003G388000 Sobic003G388000 Sobic004G177600--Sobic003G388000 Sobic004G177600--Sobic003G221500 Sobic004G339700 Sobic004G339700 Sobic004G177600--Sobic004G339700 Sobic008G063600 Sobic008G063600 Sobic004G177600--Sobic008G063600 Sobic004G177600--Sobic004G256300 Sobic004G307900 Sobic004G307900 Sobic004G177600--Sobic004G307900 Sobic004G177600--Sobic001G462600 Sobic004G322300 Sobic004G322300 Sobic004G177600--Sobic004G322300 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic003G222700--Sobic002G399900 Sobic003G023200 Sobic003G023200 Sobic006G212900--Sobic003G023200 Sobic004G247100 Sobic004G247100 Sobic006G212900--Sobic004G247100 Sobic003G193500 Sobic003G193500 Sobic006G212900--Sobic003G193500 Sobic009G195700 Sobic009G195700 Sobic006G212900--Sobic009G195700 Sobic006G212900--Sobic004G256300 Sobic003G129300 Sobic003G129300 Sobic006G212900--Sobic003G129300 Sobic008G116600 Sobic008G116600 Sobic006G212900--Sobic008G116600 Sobic006G212900--Sobic003G222700 Sobic006G212900--Sobic001G467100 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100
Octagon: transcription factors


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