Gene annotation
Transcriptome id Sobic.003G128300.1
Synonym Sb03g010860, ECR1
Functional annotation NEDD8-activating enzyme E1 catalytic subunit, putative, expressed
UniProt C5XH65
Pfam PF08825 PF00899
Panther DB PTHR10953 PTHR10953:SF6
NCBI CDD KOG2015; NEDD8-activating complex, catalytic component UBA3
KEGG Orthology K10686; UBE1C, ubiquitin-activating enzyme E1 C
Gene Ontology GO:0016881; acid-amino acid ligase activity GO:0005524ATP binding GO:0008641ubiquitin-like modifier activating enzyme activity


Orthologs (automatic annotation)
TAIR AT5G19180 : E1 C-terminal related 1
RAP-DB (Rice) LOC_Os01g16540.1 : NEDD8-activating enzyme E1 catalytic subunit, putative, expressed
MaizeGDB (Corn) Zm00025a035226
Brachypodium KQK03861
Barley HORVU3Hr1G038580.2 , HORVU3Hr1G038580.1
Wheat TraesCS3D02G191000 , TraesCS3A02G187200 , TraesCS3B02G216600
Populus -


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cDNA sequences
Sobic.003G128300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
2 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
3 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
5 Sobic.004G320100 expressed protein -
6 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
7 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
8 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
9 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
10 Sobic.003G201900 coiled-coil domain-containing protein, putative, expressed -
11 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
12 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
13 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
14 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
15 Sobic.004G192900 expressed protein -
16 Sobic.003G004600 expressed protein -
17 Sobic.001G462600 retinoblastoma-binding protein-like, putative, expressed K14961: RBBP5, SWD1, COMPASS component SWD1
18 Sobic.003G221500 CENP-C1, putative, expressed -
19 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
20 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22


Gene co-expression network
sample Sobic003G128300 Sobic003G128300 Sobic003G132000 Sobic003G132000 Sobic003G128300--Sobic003G132000 Sobic001G458200 Sobic001G458200 Sobic003G128300--Sobic001G458200 Sobic001G487100 Sobic001G487100 Sobic003G128300--Sobic001G487100 Sobic003G148900 Sobic003G148900 Sobic003G128300--Sobic003G148900 Sobic004G320100 Sobic004G320100 Sobic003G128300--Sobic004G320100 Sobic003G046300 Sobic003G046300 Sobic003G128300--Sobic003G046300 Sobic002G306600 Sobic002G306600 Sobic003G128300--Sobic002G306600 Sobic008G103300 Sobic008G103300 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic003G192000 Sobic003G192000 Sobic001G458200--Sobic003G192000 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic002G359900 Sobic002G359900 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic001G458200--Sobic003G148900 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic001G487100--Sobic003G132000 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic004G320100--Sobic001G487100 Sobic010G154000 Sobic010G154000 Sobic004G320100--Sobic010G154000 Sobic004G320100--Sobic003G132000 Sobic004G320100--Sobic006G049100 Sobic004G320100--Sobic003G128300 Sobic006G008800 Sobic006G008800 Sobic004G320100--Sobic006G008800 Sobic004G320100--Sobic006G270600 Sobic003G212900 Sobic003G212900 Sobic004G320100--Sobic003G212900 Sobic004G320100--Sobic003G121300 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic003G046300--Sobic001G487100 Sobic003G004600 Sobic003G004600 Sobic002G306600--Sobic003G004600 Sobic010G059700 Sobic010G059700 Sobic002G306600--Sobic010G059700 Sobic002G306600--Sobic001G458200 Sobic002G306600--Sobic003G128300 Sobic001G157600 Sobic001G157600 Sobic002G306600--Sobic001G157600 Sobic003G221500 Sobic003G221500 Sobic002G306600--Sobic003G221500 Sobic002G267400 Sobic002G267400 Sobic002G306600--Sobic002G267400 Sobic002G306600--Sobic001G487100 Sobic004G088700 Sobic004G088700 Sobic002G306600--Sobic004G088700 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic008G103300--Sobic003G046300 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400
Octagon: transcription factors


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