Gene annotation
Transcriptome id Sobic.001G458200.1
Synonym Sb01g043020
Functional annotation protein transport protein Sec61 subunit alpha, putative, expressed
UniProt A0A1B6QPP8
Pfam PF10559 PF00344
Panther DB PTHR10906
NCBI CDD -
KEGG Orthology K10956; protein transport protein SEC61 subunit alpha
Gene Ontology GO:0016020; membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT2G34250 : SecY protein transport family protein
RAP-DB (Rice) LOC_Os03g11440.1 : protein transport protein Sec61 subunit alpha, putative, expressed
MaizeGDB (Corn) Zm00025a053092 , Zm00025a008277 , Zm00025a001279
Brachypodium KQK23143 , KQJ89927 , KQK22928
Barley HORVU5Hr1G041730.2 , HORVU5Hr1G041730.3 , HORVU5Hr1G041730.1 , HORVU5Hr1G041730.4 , HORVU1Hr1G068750.5 , HORVU1Hr1G068750.4 , HORVU1Hr1G068750.1 , HORVU1Hr1G068750.3 , HORVU1Hr1G068750.2 , HORVU3Hr1G064680.5 , HORVU3Hr1G064680.4 , HORVU3Hr1G064680.7 , HORVU3Hr1G064680.6 , HORVU3Hr1G064680.1 , HORVU3Hr1G064680.3 , HORVU3Hr1G064680.2 , HORVU3Hr1G064680.9 , HORVU3Hr1G064680.8 , HORVU3Hr1G064680.11 , HORVU3Hr1G064680.10 , HORVU3Hr1G064680.13 , HORVU3Hr1G064680.12
Wheat TraesCS5D02G193300 , TraesCS5A02G197500 , TraesCS4D02G247900 , TraesCS5B02G186100 , TraesCS5B02G186100 , TraesCS4A02G056500 , TraesCS4B02G248500 , TraesCS4B02G248500
Populus -


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cDNA sequences
Sobic.001G458200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
2 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
3 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
4 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
5 Sobic.002G093900 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
6 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
7 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
8 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
9 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
10 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
11 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
12 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
13 Sobic.006G225300 expressed protein -
14 Sobic.009G160600 Yip1 domain containing protein, expressed -
15 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
16 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
17 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
18 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
19 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
20 Sobic.006G095200 signal peptidase complex subunit 2, putative, expressed K12947: SPCS2, signal peptidase complex subunit 2


Gene co-expression network
sample Sobic001G458200 Sobic001G458200 Sobic003G192000 Sobic003G192000 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic002G359900 Sobic002G359900 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic003G192000--Sobic001G458200 Sobic003G407900 Sobic003G407900 Sobic003G192000--Sobic003G407900 Sobic002G403200 Sobic002G403200 Sobic003G192000--Sobic002G403200 Sobic006G261100 Sobic006G261100 Sobic003G192000--Sobic006G261100 Sobic010G253100 Sobic010G253100 Sobic003G192000--Sobic010G253100 Sobic003G192000--Sobic002G359900 Sobic009G030400 Sobic009G030400 Sobic003G192000--Sobic009G030400 Sobic002G276900 Sobic002G276900 Sobic003G192000--Sobic002G276900 Sobic010G095700 Sobic010G095700 Sobic003G192000--Sobic010G095700 Sobic003G132000 Sobic003G132000 Sobic003G128300--Sobic003G132000 Sobic003G128300--Sobic001G458200 Sobic001G487100 Sobic001G487100 Sobic003G128300--Sobic001G487100 Sobic003G128300--Sobic003G148900 Sobic004G320100 Sobic004G320100 Sobic003G128300--Sobic004G320100 Sobic003G046300 Sobic003G046300 Sobic003G128300--Sobic003G046300 Sobic003G128300--Sobic002G306600 Sobic008G103300 Sobic008G103300 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic006G120800 Sobic006G120800 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic002G359900--Sobic001G458200 Sobic002G359900--Sobic002G403200 Sobic001G038100 Sobic001G038100 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic002G093900--Sobic001G458200 Sobic001G428500 Sobic001G428500 Sobic002G093900--Sobic001G428500 Sobic003G121600 Sobic003G121600 Sobic002G093900--Sobic003G121600 Sobic008G162000 Sobic008G162000 Sobic002G093900--Sobic008G162000 Sobic009G070200 Sobic009G070200 Sobic002G093900--Sobic009G070200 Sobic002G093900--Sobic003G192000 Sobic003G416600 Sobic003G416600 Sobic002G093900--Sobic003G416600 Sobic001G050900 Sobic001G050900 Sobic002G093900--Sobic001G050900 Sobic007G140500 Sobic007G140500 Sobic002G093900--Sobic007G140500 Sobic010G266300 Sobic010G266300 Sobic008G134900--Sobic010G266300 Sobic008G134900--Sobic009G070200 Sobic001G066700 Sobic001G066700 Sobic008G134900--Sobic001G066700 Sobic008G134900--Sobic007G152400 Sobic008G134900--Sobic001G458200 Sobic004G204800 Sobic004G204800 Sobic008G134900--Sobic004G204800 Sobic009G122100 Sobic009G122100 Sobic008G134900--Sobic009G122100 Sobic009G077400 Sobic009G077400 Sobic008G134900--Sobic009G077400 Sobic003G382900 Sobic003G382900 Sobic008G134900--Sobic003G382900 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic003G004600 Sobic003G004600 Sobic002G306600--Sobic003G004600 Sobic010G059700 Sobic010G059700 Sobic002G306600--Sobic010G059700 Sobic002G306600--Sobic001G458200 Sobic002G306600--Sobic003G128300 Sobic001G157600 Sobic001G157600 Sobic002G306600--Sobic001G157600 Sobic003G221500 Sobic003G221500 Sobic002G306600--Sobic003G221500 Sobic002G267400 Sobic002G267400 Sobic002G306600--Sobic002G267400 Sobic002G306600--Sobic001G487100 Sobic004G088700 Sobic004G088700 Sobic002G306600--Sobic004G088700 Sobic009G201800 Sobic009G201800 Sobic002G044000--Sobic009G201800 Sobic003G358300 Sobic003G358300 Sobic002G044000--Sobic003G358300 Sobic002G044000--Sobic009G070200 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic004G032000 Sobic004G032000 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic002G044000--Sobic007G152400 Sobic002G386300 Sobic002G386300 Sobic002G044000--Sobic002G386300
Octagon: transcription factors


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