Gene annotation
Transcriptome id Sobic.006G095200.2
Synonym Sb06g018000
Functional annotation signal peptidase complex subunit 2, putative, expressed
UniProt A0A1Z5RD73
Pfam PF06703
Panther DB PTHR13085
NCBI CDD KOG4072; Signal peptidase complex, subunit SPC25
KEGG Orthology K12947; SPCS2, signal peptidase complex subunit 2
Gene Ontology GO:0016021; integral component of membrane GO:0008233peptidase activity GO:0006465signal peptide processing GO:0005787signal peptidase complex


Orthologs (automatic annotation)
TAIR AT2G39960 : Microsomal signal peptidase 25 kDa subunit (SPC25)
RAP-DB (Rice) LOC_Os04g36859.1 : signal peptidase complex subunit 2, putative, expressed
MaizeGDB (Corn) Zm00025a011218
Brachypodium KQJ82797
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G095200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
2 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
3 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
4 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
5 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
6 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
7 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
8 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase
9 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
10 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
11 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
12 Sobic.001G286300 - -
13 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
14 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
15 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
16 Sobic.009G216700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
17 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
18 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
19 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
20 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit


Gene co-expression network
sample Sobic006G095200 Sobic006G095200 Sobic009G120100 Sobic009G120100 Sobic006G095200--Sobic009G120100 Sobic007G012900 Sobic007G012900 Sobic006G095200--Sobic007G012900 Sobic010G266300 Sobic010G266300 Sobic006G095200--Sobic010G266300 Sobic007G117800 Sobic007G117800 Sobic006G095200--Sobic007G117800 Sobic010G008800 Sobic010G008800 Sobic006G095200--Sobic010G008800 Sobic003G148900 Sobic003G148900 Sobic006G095200--Sobic003G148900 Sobic007G152400 Sobic007G152400 Sobic006G095200--Sobic007G152400 Sobic008G162000 Sobic008G162000 Sobic006G095200--Sobic008G162000 Sobic009G070200 Sobic009G070200 Sobic006G095200--Sobic009G070200 Sobic004G063500 Sobic004G063500 Sobic009G120100--Sobic004G063500 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic009G120100--Sobic006G095200 Sobic002G331300 Sobic002G331300 Sobic009G120100--Sobic002G331300 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic005G111100 Sobic005G111100 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic008G134900 Sobic008G134900 Sobic010G266300--Sobic008G134900 Sobic010G266300--Sobic009G070200 Sobic001G066700 Sobic001G066700 Sobic010G266300--Sobic001G066700 Sobic010G266300--Sobic003G233500 Sobic010G266300--Sobic010G008800 Sobic010G266300--Sobic007G152400 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic004G204800 Sobic004G204800 Sobic010G266300--Sobic004G204800 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200 Sobic001G074700 Sobic001G074700 Sobic010G008800--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic010G008800--Sobic001G342200 Sobic001G350600 Sobic001G350600 Sobic010G008800--Sobic001G350600 Sobic006G013000 Sobic006G013000 Sobic010G008800--Sobic006G013000 Sobic004G066800 Sobic004G066800 Sobic010G008800--Sobic004G066800 Sobic004G310300 Sobic004G310300 Sobic010G008800--Sobic004G310300 Sobic009G115700 Sobic009G115700 Sobic010G008800--Sobic009G115700 Sobic003G129800 Sobic003G129800 Sobic010G008800--Sobic003G129800 Sobic001G505500 Sobic001G505500 Sobic010G008800--Sobic001G505500 Sobic003G148900--Sobic003G200600 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic002G044000 Sobic002G044000 Sobic008G162000--Sobic002G044000 Sobic008G162000--Sobic007G152400 Sobic008G162000--Sobic009G070200 Sobic008G162000--Sobic006G095200 Sobic004G282100 Sobic004G282100 Sobic008G162000--Sobic004G282100 Sobic009G201800 Sobic009G201800 Sobic008G162000--Sobic009G201800 Sobic001G458200 Sobic001G458200 Sobic008G162000--Sobic001G458200 Sobic002G093900 Sobic002G093900 Sobic008G162000--Sobic002G093900 Sobic008G162000--Sobic004G204800 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic009G070200--Sobic002G044000 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.