Gene annotation
Transcriptome id Sobic.008G134900.3
Synonym Sb08g018640
Functional annotation translocon-associated protein beta domain containing protein, expressed
UniProt A0A1Z5R6H7
Pfam PF05753
Panther DB PTHR12861 PTHR12861:SF4
NCBI CDD -
KEGG Orthology K13250; translocon-associated protein subunit beta
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT5G14030 : translocon-associated protein beta (TRAPB) family protein
RAP-DB (Rice) LOC_Os01g01307.1 : translocon-associated protein beta domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004220 , Zm00025a025419
Brachypodium KQK02784 , KQK02785 , KQK02786
Barley HORVU3Hr1G014730.2 , HORVU3Hr1G014730.3 , HORVU3Hr1G014730.1 , HORVU3Hr1G014730.4 , HORVU3Hr1G014730.5
Wheat TraesCS3D02G082300 , TraesCS3B02G097200 , TraesCS3A02G082100
Populus -


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cDNA sequences
Sobic.008G134900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
2 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
3 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
4 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
5 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
6 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
7 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
8 Sobic.009G077400 mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
9 Sobic.003G382900 signal recognition particle 72 kDa protein, putative, expressed K03108: signal recognition particle subunit SRP72
10 Sobic.001G201100 cytochrome b561, putative, expressed K08360: cytochrome b-561
11 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
12 Sobic.006G095200 signal peptidase complex subunit 2, putative, expressed K12947: SPCS2, signal peptidase complex subunit 2
13 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
14 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
15 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
16 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
17 Sobic.001G058100 thioredoxin, putative, expressed -
18 Sobic.002G261900 arabinogalactan protein, putative, expressed -
19 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
20 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae


Gene co-expression network
sample Sobic008G134900 Sobic008G134900 Sobic010G266300 Sobic010G266300 Sobic008G134900--Sobic010G266300 Sobic009G070200 Sobic009G070200 Sobic008G134900--Sobic009G070200 Sobic001G066700 Sobic001G066700 Sobic008G134900--Sobic001G066700 Sobic007G152400 Sobic007G152400 Sobic008G134900--Sobic007G152400 Sobic001G458200 Sobic001G458200 Sobic008G134900--Sobic001G458200 Sobic004G204800 Sobic004G204800 Sobic008G134900--Sobic004G204800 Sobic009G122100 Sobic009G122100 Sobic008G134900--Sobic009G122100 Sobic009G077400 Sobic009G077400 Sobic008G134900--Sobic009G077400 Sobic003G382900 Sobic003G382900 Sobic008G134900--Sobic003G382900 Sobic010G266300--Sobic008G134900 Sobic010G266300--Sobic009G070200 Sobic010G266300--Sobic001G066700 Sobic003G233500 Sobic003G233500 Sobic010G266300--Sobic003G233500 Sobic010G008800 Sobic010G008800 Sobic010G266300--Sobic010G008800 Sobic010G266300--Sobic007G152400 Sobic005G111100 Sobic005G111100 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic010G266300--Sobic004G204800 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic002G044000 Sobic002G044000 Sobic009G070200--Sobic002G044000 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic001G066700--Sobic010G266300 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic003G192000 Sobic003G192000 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic002G359900 Sobic002G359900 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic001G458200--Sobic008G134900 Sobic003G148900 Sobic003G148900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic001G458200--Sobic002G044000 Sobic004G204800--Sobic002G257400 Sobic004G204800--Sobic007G152400 Sobic004G335000 Sobic004G335000 Sobic004G204800--Sobic004G335000 Sobic004G204800--Sobic003G043400 Sobic004G204800--Sobic010G266300 Sobic001G058100 Sobic001G058100 Sobic004G204800--Sobic001G058100 Sobic004G204800--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic004G204800--Sobic003G428200 Sobic001G010700 Sobic001G010700 Sobic004G204800--Sobic001G010700 Sobic007G096700 Sobic007G096700 Sobic009G122100--Sobic007G096700 Sobic009G122100--Sobic002G257400 Sobic001G461900 Sobic001G461900 Sobic009G122100--Sobic001G461900 Sobic008G111400 Sobic008G111400 Sobic009G122100--Sobic008G111400 Sobic009G122100--Sobic010G266300 Sobic009G122100--Sobic001G224400 Sobic002G222900 Sobic002G222900 Sobic009G122100--Sobic002G222900 Sobic009G122100--Sobic007G152400 Sobic009G122100--Sobic001G058100 Sobic003G152900 Sobic003G152900 Sobic009G077400--Sobic003G152900 Sobic002G090700 Sobic002G090700 Sobic009G077400--Sobic002G090700 Sobic004G310300 Sobic004G310300 Sobic009G077400--Sobic004G310300 Sobic006G222400 Sobic006G222400 Sobic009G077400--Sobic006G222400 Sobic009G077400--Sobic010G266300 Sobic004G066800 Sobic004G066800 Sobic009G077400--Sobic004G066800 Sobic009G077400--Sobic001G010700 Sobic010G154700 Sobic010G154700 Sobic009G077400--Sobic010G154700 Sobic009G077400--Sobic001G058100 Sobic009G160600 Sobic009G160600 Sobic003G382900--Sobic009G160600 Sobic001G421400 Sobic001G421400 Sobic003G382900--Sobic001G421400 Sobic010G238700 Sobic010G238700 Sobic003G382900--Sobic010G238700 Sobic006G225300 Sobic006G225300 Sobic003G382900--Sobic006G225300 Sobic003G382900--Sobic002G090700 Sobic003G382900--Sobic003G148900 Sobic001G161900 Sobic001G161900 Sobic003G382900--Sobic001G161900 Sobic003G382900--Sobic006G222400 Sobic003G038600 Sobic003G038600 Sobic003G382900--Sobic003G038600
Octagon: transcription factors


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