Gene annotation
Transcriptome id Sobic.002G044000.1
Synonym TRIP-1, Sb02g003760, TIF3I1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XAA7
Pfam PF00400
Panther DB PTHR19877
NCBI CDD KOG0643; Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)
KEGG Orthology K03246; translation initiation factor 3 subunit I
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G46290 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g21660.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016111 , Zm00025a045090
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
2 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
3 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
4 Sobic.001G285300 expressed protein -
5 Sobic.006G143500 expressed protein -
6 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
7 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
8 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
9 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
10 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
11 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
14 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
15 Sobic.001G398600 anaphase-promoting complex subunit 11, putative, expressed K03358: anaphase-promoting complex subunit 11
16 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
17 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
18 Sobic.003G039200 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
19 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
20 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5


Gene co-expression network
sample Sobic002G044000 Sobic002G044000 Sobic009G201800 Sobic009G201800 Sobic002G044000--Sobic009G201800 Sobic003G358300 Sobic003G358300 Sobic002G044000--Sobic003G358300 Sobic009G070200 Sobic009G070200 Sobic002G044000--Sobic009G070200 Sobic001G285300 Sobic001G285300 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic004G032000 Sobic004G032000 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic007G152400 Sobic007G152400 Sobic002G044000--Sobic007G152400 Sobic002G386300 Sobic002G386300 Sobic002G044000--Sobic002G386300 Sobic009G201800--Sobic002G044000 Sobic004G010700 Sobic004G010700 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic001G382200 Sobic001G382200 Sobic009G201800--Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic010G266300 Sobic010G266300 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G532100 Sobic001G532100 Sobic001G285300--Sobic001G532100 Sobic001G285300--Sobic006G143500 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic006G094600 Sobic006G094600 Sobic001G285300--Sobic006G094600 Sobic006G143500--Sobic004G032000 Sobic006G143500--Sobic001G285300 Sobic006G143500--Sobic002G044000 Sobic001G517600 Sobic001G517600 Sobic006G143500--Sobic001G517600 Sobic006G143500--Sobic001G402300 Sobic006G143500--Sobic001G532100 Sobic006G143500--Sobic003G358300 Sobic006G143500--Sobic001G126200 Sobic001G402600 Sobic001G402600 Sobic006G143500--Sobic001G402600 Sobic004G032000--Sobic001G517600 Sobic003G129800 Sobic003G129800 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic001G128400 Sobic001G128400 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic003G109600 Sobic003G109600 Sobic004G032000--Sobic003G109600 Sobic005G050500 Sobic005G050500 Sobic004G032000--Sobic005G050500 Sobic006G222400 Sobic006G222400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic001G126200--Sobic006G094600 Sobic003G131300 Sobic003G131300 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic002G386300--Sobic001G517600 Sobic002G386300--Sobic003G358300 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G386300--Sobic002G044000 Sobic002G386300--Sobic009G191200 Sobic003G280700 Sobic003G280700 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic004G343600 Sobic004G343600 Sobic002G386300--Sobic004G343600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.