Gene annotation
Transcriptome id Sobic.009G120100.1
Synonym Sb09g018810
Functional annotation OsSigP5 - Putative Type I Signal Peptidase homologue
employs a putative Ser/His catalytic dyad, expressed
UniProt C5YXB8
Pfam PF00717
Panther DB PTHR10806 PTHR10806:SF10
NCBI CDD KOG3342; Signal peptidase I
KEGG Orthology K13280; SEC11, signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008233peptidase activity GO:0006465signal peptide processing


Orthologs (automatic annotation)
TAIR AT1G52600 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os06g16260.1 : OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a043350 , Zm00025a036923
Brachypodium KQK12600 , KQK12601 , KQK09700 , KQK06575 , KQK12599
Barley HORVU5Hr1G109380.4 , HORVU1Hr1G057530.2 , HORVU1Hr1G057530.1 , HORVU5Hr1G109380.2 , HORVU1Hr1G057530.4 , HORVU5Hr1G109380.3 , HORVU1Hr1G057530.3
Wheat TraesCS5B02G463200 , TraesCS5D02G466200 , TraesCS1A02G233200 , TraesCS1D02G238300 , TraesCS1B02G249800 , TraesCS5A02G455600
Populus -


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cDNA sequences
Sobic.009G120100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
2 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
3 Sobic.001G286300 - -
4 Sobic.006G095200 signal peptidase complex subunit 2, putative, expressed K12947: SPCS2, signal peptidase complex subunit 2
5 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
6 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
7 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
9 Sobic.007G029400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
10 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
11 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
12 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
13 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
14 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
15 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
16 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
17 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
18 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
19 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
20 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3


Gene co-expression network
sample Sobic009G120100 Sobic009G120100 Sobic004G063500 Sobic004G063500 Sobic009G120100--Sobic004G063500 Sobic007G152400 Sobic007G152400 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic002G331300 Sobic002G331300 Sobic009G120100--Sobic002G331300 Sobic009G070200 Sobic009G070200 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic005G111100 Sobic005G111100 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic004G063500--Sobic009G120100 Sobic003G325700 Sobic003G325700 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic009G216800 Sobic009G216800 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic002G113500 Sobic002G113500 Sobic004G063500--Sobic002G113500 Sobic006G231700 Sobic006G231700 Sobic004G063500--Sobic006G231700 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic002G296200 Sobic002G296200 Sobic001G286300--Sobic002G296200 Sobic008G094600 Sobic008G094600 Sobic001G286300--Sobic008G094600 Sobic006G013000 Sobic006G013000 Sobic001G286300--Sobic006G013000 Sobic001G286300--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic001G286300--Sobic003G129800 Sobic002G309700 Sobic002G309700 Sobic001G286300--Sobic002G309700 Sobic009G001900 Sobic009G001900 Sobic001G286300--Sobic009G001900 Sobic003G296800 Sobic003G296800 Sobic001G286300--Sobic003G296800 Sobic007G161700 Sobic007G161700 Sobic001G286300--Sobic007G161700 Sobic006G095200--Sobic009G120100 Sobic007G012900 Sobic007G012900 Sobic006G095200--Sobic007G012900 Sobic006G095200--Sobic010G266300 Sobic007G117800 Sobic007G117800 Sobic006G095200--Sobic007G117800 Sobic010G008800 Sobic010G008800 Sobic006G095200--Sobic010G008800 Sobic003G148900 Sobic003G148900 Sobic006G095200--Sobic003G148900 Sobic006G095200--Sobic007G152400 Sobic008G162000 Sobic008G162000 Sobic006G095200--Sobic008G162000 Sobic006G095200--Sobic009G070200 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic002G044000 Sobic002G044000 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic003G072300 Sobic003G072300 Sobic003G233500--Sobic003G072300 Sobic001G403500 Sobic001G403500 Sobic003G233500--Sobic001G403500 Sobic002G135200 Sobic002G135200 Sobic003G233500--Sobic002G135200 Sobic004G198400 Sobic004G198400 Sobic003G233500--Sobic004G198400 Sobic002G081600 Sobic002G081600 Sobic003G233500--Sobic002G081600 Sobic006G213000 Sobic006G213000 Sobic003G233500--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G233500--Sobic010G204500 Sobic002G056200 Sobic002G056200 Sobic003G233500--Sobic002G056200 Sobic002G379500 Sobic002G379500 Sobic003G233500--Sobic002G379500 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic007G029400--Sobic005G050500 Sobic001G039400 Sobic001G039400 Sobic007G029400--Sobic001G039400 Sobic007G029400--Sobic009G179100 Sobic003G109600 Sobic003G109600 Sobic007G029400--Sobic003G109600 Sobic002G304900 Sobic002G304900 Sobic007G029400--Sobic002G304900 Sobic007G029400--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic007G029400--Sobic009G223300 Sobic010G069400 Sobic010G069400 Sobic007G029400--Sobic010G069400 Sobic004G349700 Sobic004G349700 Sobic007G029400--Sobic004G349700
Octagon: transcription factors


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