Gene annotation
Transcriptome id Sobic.010G266300.1
Synonym Sb10g030160
Functional annotation translocon-associated protein subunit alpha precursor, putative, expressed
UniProt C5Z1V6
Pfam PF03896
Panther DB PTHR12924 PTHR12924:SF0
NCBI CDD KOG1631; Translocon-associated complex TRAP, alpha subunit
KEGG Orthology K13249; translocon-associated protein subunit alpha
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT2G21160 : Translocon-associated protein (TRAP), alpha subunit
RAP-DB (Rice) LOC_Os06g50154.1 : translocon-associated protein subunit alpha precursor, putative, expressed
MaizeGDB (Corn) Zm00025a018485 , Zm00025a041720
Brachypodium KQK17548
Barley HORVU7Hr1G091720.2 , HORVU7Hr1G091720.3 , HORVU7Hr1G091720.1 , HORVU7Hr1G091720.6 , HORVU7Hr1G091720.7 , HORVU7Hr1G091720.5
Wheat TraesCS7D02G382700 , TraesCS7D02G382700 , TraesCS7D02G382700 , TraesCS7B02G289000 , TraesCS7B02G289000 , TraesCS7A02G386100 , TraesCS7A02G386100 , TraesCS7A02G386100
Populus -


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cDNA sequences
Sobic.010G266300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
2 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
3 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
4 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
5 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
6 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
7 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
8 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
9 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
10 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
11 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
12 Sobic.002G261900 arabinogalactan protein, putative, expressed -
13 Sobic.001G201100 cytochrome b561, putative, expressed K08360: cytochrome b-561
14 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
15 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
16 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
18 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
19 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
20 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit


Gene co-expression network
sample Sobic010G266300 Sobic010G266300 Sobic008G134900 Sobic008G134900 Sobic010G266300--Sobic008G134900 Sobic009G070200 Sobic009G070200 Sobic010G266300--Sobic009G070200 Sobic001G066700 Sobic001G066700 Sobic010G266300--Sobic001G066700 Sobic003G233500 Sobic003G233500 Sobic010G266300--Sobic003G233500 Sobic010G008800 Sobic010G008800 Sobic010G266300--Sobic010G008800 Sobic007G152400 Sobic007G152400 Sobic010G266300--Sobic007G152400 Sobic005G111100 Sobic005G111100 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic004G204800 Sobic004G204800 Sobic010G266300--Sobic004G204800 Sobic008G134900--Sobic010G266300 Sobic008G134900--Sobic009G070200 Sobic008G134900--Sobic001G066700 Sobic008G134900--Sobic007G152400 Sobic001G458200 Sobic001G458200 Sobic008G134900--Sobic001G458200 Sobic008G134900--Sobic004G204800 Sobic009G122100 Sobic009G122100 Sobic008G134900--Sobic009G122100 Sobic009G077400 Sobic009G077400 Sobic008G134900--Sobic009G077400 Sobic003G382900 Sobic003G382900 Sobic008G134900--Sobic003G382900 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic002G044000 Sobic002G044000 Sobic009G070200--Sobic002G044000 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic001G066700--Sobic010G266300 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic003G072300 Sobic003G072300 Sobic003G233500--Sobic003G072300 Sobic001G403500 Sobic001G403500 Sobic003G233500--Sobic001G403500 Sobic002G135200 Sobic002G135200 Sobic003G233500--Sobic002G135200 Sobic004G198400 Sobic004G198400 Sobic003G233500--Sobic004G198400 Sobic002G081600 Sobic002G081600 Sobic003G233500--Sobic002G081600 Sobic006G213000 Sobic006G213000 Sobic003G233500--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G233500--Sobic010G204500 Sobic002G056200 Sobic002G056200 Sobic003G233500--Sobic002G056200 Sobic002G379500 Sobic002G379500 Sobic003G233500--Sobic002G379500 Sobic001G074700 Sobic001G074700 Sobic010G008800--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic010G008800--Sobic001G342200 Sobic001G350600 Sobic001G350600 Sobic010G008800--Sobic001G350600 Sobic006G013000 Sobic006G013000 Sobic010G008800--Sobic006G013000 Sobic004G066800 Sobic004G066800 Sobic010G008800--Sobic004G066800 Sobic004G310300 Sobic004G310300 Sobic010G008800--Sobic004G310300 Sobic009G115700 Sobic009G115700 Sobic010G008800--Sobic009G115700 Sobic003G129800 Sobic003G129800 Sobic010G008800--Sobic003G129800 Sobic001G505500 Sobic001G505500 Sobic010G008800--Sobic001G505500 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic004G204800--Sobic002G257400 Sobic004G204800--Sobic007G152400 Sobic004G335000 Sobic004G335000 Sobic004G204800--Sobic004G335000 Sobic004G204800--Sobic003G043400 Sobic004G204800--Sobic010G266300 Sobic001G058100 Sobic001G058100 Sobic004G204800--Sobic001G058100 Sobic004G204800--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic004G204800--Sobic003G428200 Sobic001G010700 Sobic001G010700 Sobic004G204800--Sobic001G010700
Octagon: transcription factors


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