Gene annotation
Transcriptome id Sobic.004G204800.2
Synonym Sb04g025090
Functional annotation 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
UniProt A0A1Z5RNH6
Pfam PF01399 PF10602
Panther DB PTHR14145 PTHR14145:SF1
NCBI CDD -
KEGG Orthology K03037; PSMD6, 26S proteasome regulatory subunit N7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G24820 : 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
RAP-DB (Rice) LOC_Os04g40850.1 : 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
MaizeGDB (Corn) Zm00025a021287 , Zm00025a010959
Brachypodium KQJ83227 , KQK00191
Barley HORVU2Hr1G083860.1 , HORVU0Hr1G004970.2 , HORVU0Hr1G004970.1 , HORVU6Hr1G054100.1 , HORVU6Hr1G054100.2 , HORVU6Hr1G054100.3
Wheat TraesCS6B02G242700 , TraesCS2B02G361900 , TraesCS2D02G341500 , TraesCS6D02G195300 , TraesCS6A02G212300 , TraesCS2A02G320800
Populus PNT01226 , PNT01228 , PNT10308


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cDNA sequences
Sobic.004G204800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G257400 peptidase, T1 family, putative, expressed -
2 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
3 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
4 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
5 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
6 Sobic.001G058100 thioredoxin, putative, expressed -
7 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
8 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
9 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
10 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
11 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
12 Sobic.003G104700 Rer1 protein, putative, expressed -
13 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
14 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
15 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
16 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
17 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
18 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
19 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
20 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3


Gene co-expression network
sample Sobic004G204800 Sobic004G204800 Sobic002G257400 Sobic002G257400 Sobic004G204800--Sobic002G257400 Sobic007G152400 Sobic007G152400 Sobic004G204800--Sobic007G152400 Sobic004G335000 Sobic004G335000 Sobic004G204800--Sobic004G335000 Sobic003G043400 Sobic003G043400 Sobic004G204800--Sobic003G043400 Sobic010G266300 Sobic010G266300 Sobic004G204800--Sobic010G266300 Sobic001G058100 Sobic001G058100 Sobic004G204800--Sobic001G058100 Sobic002G428200 Sobic002G428200 Sobic004G204800--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic004G204800--Sobic003G428200 Sobic001G010700 Sobic001G010700 Sobic004G204800--Sobic001G010700 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic004G224900 Sobic004G224900 Sobic002G257400--Sobic004G224900 Sobic002G257400--Sobic004G335000 Sobic002G257400--Sobic002G428200 Sobic002G257400--Sobic007G152400 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic002G257400--Sobic001G058100 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic004G335000--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic008G134900 Sobic008G134900 Sobic010G266300--Sobic008G134900 Sobic009G070200 Sobic009G070200 Sobic010G266300--Sobic009G070200 Sobic001G066700 Sobic001G066700 Sobic010G266300--Sobic001G066700 Sobic003G233500 Sobic003G233500 Sobic010G266300--Sobic003G233500 Sobic010G008800 Sobic010G008800 Sobic010G266300--Sobic010G008800 Sobic010G266300--Sobic007G152400 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic010G266300--Sobic004G204800 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic001G058100--Sobic002G257400 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G289400 Sobic001G289400 Sobic001G058100--Sobic001G289400 Sobic003G104700 Sobic003G104700 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic002G083266 Sobic002G083266 Sobic001G058100--Sobic002G083266 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic002G428200--Sobic003G104700 Sobic009G117200 Sobic009G117200 Sobic003G428200--Sobic009G117200 Sobic003G428200--Sobic004G204800 Sobic003G428200--Sobic001G010700 Sobic009G139800 Sobic009G139800 Sobic003G428200--Sobic009G139800 Sobic003G428200--Sobic007G076300 Sobic001G109300 Sobic001G109300 Sobic003G428200--Sobic001G109300 Sobic009G093200 Sobic009G093200 Sobic003G428200--Sobic009G093200 Sobic003G428200--Sobic002G257400 Sobic003G428200--Sobic007G176200 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic001G010700--Sobic002G423800
Octagon: transcription factors


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