Gene annotation
Transcriptome id Sobic.002G423800.3,Sobic.002G423800.2
Synonym Sb02g043460
Functional annotation trafficking protein particle complex subunit, putative, expressed
UniProt A0A1W0W7Z3
Pfam PF04099
Panther DB PTHR12403
NCBI CDD KOG3487; TRAPP 20 K subunit
KEGG Orthology -
Gene Ontology GO:0006888; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005801cis-Golgi network GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G80500 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os02g40000.2,LOC_Os02g40000.3 : trafficking protein particle complex subunit, putative, expressed
MaizeGDB (Corn) Zm00025a015473 , Zm00025a049214
Brachypodium KQJ83432
Barley HORVU6Hr1G056860.11 , HORVU6Hr1G056860.10 , HORVU6Hr1G056860.13 , HORVU6Hr1G056860.15 , HORVU6Hr1G056860.14 , HORVU6Hr1G056860.16 , HORVU2Hr1G087050.4 , HORVU2Hr1G087050.5 , HORVU2Hr1G087050.2 , HORVU2Hr1G087050.3 , HORVU6Hr1G056860.5 , HORVU6Hr1G056860.4 , HORVU6Hr1G056860.7 , HORVU6Hr1G056860.6 , HORVU6Hr1G056860.1 , HORVU6Hr1G056860.3 , HORVU6Hr1G056860.2 , HORVU6Hr1G056860.9 , HORVU6Hr1G056860.8
Wheat TraesCS6D02G204700 , TraesCS6D02G204700 , TraesCS2A02G358000 , TraesCS2A02G358000 , TraesCS2B02G377300 , TraesCS2B02G377300 , TraesCS6B02G251500 , TraesCS6B02G251500 , TraesCS2D02G356800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G423800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
2 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
3 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
4 Sobic.001G444300 expressed protein -
5 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
6 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
8 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
9 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
10 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
11 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
12 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
14 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
17 Sobic.003G330500 peptidase, T1 family, putative, expressed -
18 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
19 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
20 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2


Gene co-expression network
sample Sobic002G423800 Sobic002G423800 Sobic003G043400 Sobic003G043400 Sobic002G423800--Sobic003G043400 Sobic006G211800 Sobic006G211800 Sobic002G423800--Sobic006G211800 Sobic001G010700 Sobic001G010700 Sobic002G423800--Sobic001G010700 Sobic001G444300 Sobic001G444300 Sobic002G423800--Sobic001G444300 Sobic002G428200 Sobic002G428200 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic006G252200 Sobic006G252200 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic007G176200 Sobic007G176200 Sobic002G423800--Sobic007G176200 Sobic003G043400--Sobic002G423800 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic001G010700--Sobic002G423800 Sobic001G145500 Sobic001G145500 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic001G444300--Sobic002G423800 Sobic001G444300--Sobic006G211800 Sobic001G444300--Sobic007G176200 Sobic001G444300--Sobic006G252200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic004G348900 Sobic004G348900 Sobic001G444300--Sobic004G348900 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic002G428200--Sobic003G104700 Sobic007G217400 Sobic007G217400 Sobic001G542900--Sobic007G217400 Sobic001G542900--Sobic002G423800 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic001G542900--Sobic003G043400 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic001G542900--Sobic007G176200 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic010G073100 Sobic010G073100 Sobic008G145100--Sobic010G073100 Sobic008G145100--Sobic002G423800 Sobic008G145100--Sobic008G110500 Sobic008G145100--Sobic001G444300 Sobic002G029300 Sobic002G029300 Sobic008G145100--Sobic002G029300 Sobic001G033500 Sobic001G033500 Sobic008G145100--Sobic001G033500 Sobic004G010900 Sobic004G010900 Sobic008G145100--Sobic004G010900 Sobic006G203100 Sobic006G203100 Sobic008G145100--Sobic006G203100 Sobic008G129600 Sobic008G129600 Sobic008G145100--Sobic008G129600 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.