Gene annotation
Transcriptome id Sobic.003G148900.2
Synonym Sb03g012920
Functional annotation translation machinery-associated protein 20, putative, expressed
UniProt A0A1B6Q3F1
Pfam PF01472
Panther DB PTHR22798
NCBI CDD KOG2523; Predicted RNA-binding protein with PUA domain
KEGG Orthology K07575; PUA domain protein
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G09150 : pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
RAP-DB (Rice) LOC_Os01g21180.1 : translation machinery-associated protein 20, putative, expressed
MaizeGDB (Corn) Zm00025a036044
Brachypodium KQK04136
Barley -
Wheat TraesCS3A02G521600 , TraesCS3B02G591400 , TraesCS3D02G527700 , TraesCS3D02G527700
Populus -


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cDNA sequences
Sobic.003G148900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -
2 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
3 Sobic.002G027800 mitochondrial 60S ribosomal protein L5, putative, expressed -
4 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
5 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
6 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
7 Sobic.001G421400 expressed protein -
8 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
9 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
10 Sobic.002G357900 expressed protein -
11 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
12 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
13 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
14 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
15 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
16 Sobic.008G102600 expressed protein -
17 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
18 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
19 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
20 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -


Gene co-expression network
sample Sobic003G148900 Sobic003G148900 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic003G200600--Sobic003G148900 Sobic003G200600--Sobic001G421400 Sobic003G200600--Sobic007G117800 Sobic002G401700 Sobic002G401700 Sobic003G200600--Sobic002G401700 Sobic001G112400 Sobic001G112400 Sobic003G200600--Sobic001G112400 Sobic001G313500 Sobic001G313500 Sobic003G200600--Sobic001G313500 Sobic003G200600--Sobic007G012900 Sobic001G378200 Sobic001G378200 Sobic003G200600--Sobic001G378200 Sobic005G184200 Sobic005G184200 Sobic003G200600--Sobic005G184200 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic007G117800--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic007G117800--Sobic004G159000 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200 Sobic002G027800--Sobic003G148900 Sobic002G027800--Sobic007G012900 Sobic002G027800--Sobic008G110500 Sobic008G102600 Sobic008G102600 Sobic002G027800--Sobic008G102600 Sobic010G040900 Sobic010G040900 Sobic002G027800--Sobic010G040900 Sobic002G027800--Sobic003G200600 Sobic003G196200 Sobic003G196200 Sobic002G027800--Sobic003G196200 Sobic001G387800 Sobic001G387800 Sobic002G027800--Sobic001G387800 Sobic002G027800--Sobic001G421400 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic008G110500--Sobic001G443200 Sobic008G110500--Sobic003G148900 Sobic008G110500--Sobic008G102600 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic008G110500--Sobic010G040900 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic008G110500--Sobic003G196200 Sobic003G043400 Sobic003G043400 Sobic002G423800--Sobic003G043400 Sobic006G211800 Sobic006G211800 Sobic002G423800--Sobic006G211800 Sobic001G010700 Sobic001G010700 Sobic002G423800--Sobic001G010700 Sobic001G444300 Sobic001G444300 Sobic002G423800--Sobic001G444300 Sobic002G428200 Sobic002G428200 Sobic002G423800--Sobic002G428200 Sobic002G423800--Sobic001G542900 Sobic006G252200 Sobic006G252200 Sobic002G423800--Sobic006G252200 Sobic002G423800--Sobic008G145100 Sobic007G176200 Sobic007G176200 Sobic002G423800--Sobic007G176200 Sobic001G421400--Sobic001G313500 Sobic010G243400 Sobic010G243400 Sobic001G421400--Sobic010G243400 Sobic003G382900 Sobic003G382900 Sobic001G421400--Sobic003G382900 Sobic001G161900 Sobic001G161900 Sobic001G421400--Sobic001G161900 Sobic001G421400--Sobic003G200600 Sobic007G056100 Sobic007G056100 Sobic001G421400--Sobic007G056100 Sobic001G512400 Sobic001G512400 Sobic001G421400--Sobic001G512400 Sobic001G421400--Sobic003G148900 Sobic010G261600 Sobic010G261600 Sobic001G421400--Sobic010G261600 Sobic003G132000 Sobic003G132000 Sobic003G128300--Sobic003G132000 Sobic001G458200 Sobic001G458200 Sobic003G128300--Sobic001G458200 Sobic001G487100 Sobic001G487100 Sobic003G128300--Sobic001G487100 Sobic003G128300--Sobic003G148900 Sobic004G320100 Sobic004G320100 Sobic003G128300--Sobic004G320100 Sobic003G046300 Sobic003G046300 Sobic003G128300--Sobic003G046300 Sobic002G306600 Sobic002G306600 Sobic003G128300--Sobic002G306600 Sobic008G103300 Sobic008G103300 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic001G035400 Sobic001G035400 Sobic003G224300--Sobic001G035400 Sobic003G224300--Sobic003G148900 Sobic002G087000 Sobic002G087000 Sobic003G224300--Sobic002G087000 Sobic001G392800 Sobic001G392800 Sobic003G224300--Sobic001G392800 Sobic010G059700 Sobic010G059700 Sobic003G224300--Sobic010G059700 Sobic009G164700 Sobic009G164700 Sobic003G224300--Sobic009G164700 Sobic001G402600 Sobic001G402600 Sobic003G224300--Sobic001G402600 Sobic007G024200 Sobic007G024200 Sobic003G224300--Sobic007G024200 Sobic010G277000 Sobic010G277000 Sobic003G224300--Sobic010G277000
Octagon: transcription factors


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